Wall clock time and date at job start Sun Mar 29 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30534 * 118.19787 * 2 1 4 4 C 1.50402 * 123.19006 * 180.77671 * 3 2 1 5 5 H 1.09000 * 109.47806 * 100.86471 * 4 3 2 6 6 O 1.42896 * 109.49233 * 220.90227 * 4 3 2 7 7 C 1.42901 * 114.00184 * 269.93162 * 6 4 3 8 8 C 1.50704 * 109.46871 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99683 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00281 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.47243 * 59.99914 * 12 10 8 14 14 H 1.48502 * 109.47008 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46858 * 299.99483 * 12 10 8 16 16 C 1.53434 * 109.39695 * 340.89158 * 4 3 2 17 17 C 1.51686 * 107.37548 * 42.06909 * 16 4 3 18 18 O 1.20830 * 121.62209 * 123.78092 * 17 16 4 19 19 O 1.34986 * 116.76455 * 303.92186 * 17 16 4 20 20 H 1.08998 * 109.47531 * 89.99884 * 1 2 3 21 21 H 1.09003 * 109.47648 * 209.99841 * 1 2 3 22 22 H 1.09001 * 109.46967 * 329.99789 * 1 2 3 23 23 H 1.07998 * 118.40379 * 0.80062 * 3 2 1 24 24 H 1.08999 * 109.46687 * 300.00210 * 7 6 4 25 25 H 1.08996 * 109.46621 * 60.00516 * 7 6 4 26 26 H 0.97000 * 120.00473 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.88763 * 161.55951 * 16 4 3 28 28 H 1.09000 * 109.88708 * 282.57834 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1238 1.1504 0.0000 4 6 3.6220 1.2814 -0.0171 5 1 3.9551 1.5124 -1.0289 6 8 4.0189 2.3315 0.8670 7 6 4.0958 3.6162 0.2460 8 6 4.5214 4.6419 1.2648 9 1 4.7136 4.3426 2.2846 10 6 4.6645 5.9624 0.8952 11 7 4.4300 6.3269 -0.3465 12 14 5.1914 7.2339 2.1582 13 1 6.5232 6.8677 2.7034 14 1 5.2702 8.5692 1.5131 15 1 4.1990 7.2759 3.2621 16 6 4.2542 -0.0396 0.4407 17 6 3.4785 -1.1650 -0.2171 18 8 4.0260 -1.9949 -0.9038 19 8 2.1464 -1.1927 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.5294 2.0520 0.0133 24 1 4.8243 3.5851 -0.5641 25 1 3.1183 3.8852 -0.1543 26 1 4.5303 7.2560 -0.6065 27 1 5.2984 -0.0781 0.1304 28 1 4.1864 -0.1269 1.5251 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205611162.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:26 Heat of formation + Delta-G solvation = -110.641814 kcal Electronic energy + Delta-G solvation = -13793.564220 eV Core-core repulsion = 11196.494565 eV Total energy + Delta-G solvation = -2597.069655 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.34230 -38.02574 -37.19602 -33.61120 -32.78068 -31.66587 -27.32609 -27.17031 -23.51250 -23.06894 -22.30246 -18.59567 -17.34196 -16.87182 -16.53911 -16.06657 -15.50832 -14.55985 -14.33972 -13.96617 -13.58839 -13.50725 -12.88774 -12.62813 -12.36496 -12.26481 -11.81300 -11.27953 -11.06081 -10.91307 -10.84386 -10.32433 -10.08172 -9.26716 -9.05507 -8.54610 -8.32000 -6.19735 -4.22605 1.51235 2.25630 2.98440 3.27144 3.30452 3.33759 4.02181 4.31106 4.61764 4.79423 5.08590 5.16927 5.22045 5.33774 5.47328 5.54543 5.74315 5.82974 5.92377 6.15984 6.41201 6.93634 7.22799 7.28068 7.43263 7.68354 8.01436 8.36476 8.88537 9.42558 10.91461 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.049934 B = 0.006642 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.607576 B = 4214.579035 C = 4499.530270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.059 3.941 3 C -0.244 4.244 4 C 0.128 3.872 5 H 0.073 0.927 6 O -0.373 6.373 7 C 0.193 3.807 8 C -0.519 4.519 9 H 0.067 0.933 10 C 0.059 3.941 11 N -0.897 5.897 12 Si 0.909 3.091 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.166 4.166 17 C 0.495 3.505 18 O -0.446 6.446 19 O -0.303 6.303 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.143 0.857 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.266 0.734 27 H 0.113 0.887 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -9.689 0.519 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 C -0.264 4.264 4 C 0.069 3.931 5 H 0.091 0.909 6 O -0.293 6.293 7 C 0.119 3.881 8 C -0.557 4.557 9 H 0.085 0.915 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.736 3.264 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.204 4.204 17 C 0.336 3.664 18 O -0.325 6.325 19 O -0.219 6.219 20 H 0.097 0.903 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.160 0.840 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.530 -10.133 0.272 11.548 hybrid contribution 0.285 0.970 0.318 1.060 sum -5.245 -9.163 0.590 10.575 Atomic orbital electron populations 1.20798 0.87433 1.04096 1.03486 1.20374 0.94059 0.81802 1.01987 1.23328 0.98704 0.97818 1.06528 1.20483 0.89152 0.88214 0.95296 0.90925 1.87982 1.87983 1.17564 1.35762 1.20362 0.95870 0.77733 0.94167 1.20981 1.46562 0.91516 0.96683 0.91457 1.24939 0.95257 0.98318 0.95800 1.69944 1.48826 1.18008 1.16811 0.86371 0.79337 0.79743 0.80905 1.19949 1.21112 1.19958 1.22551 1.01455 0.92354 1.04045 1.23553 0.80865 0.85202 0.76799 1.90657 1.68379 1.40903 1.32597 1.84268 1.23365 1.32499 1.81801 0.90313 0.90610 0.89286 0.83974 0.97318 0.97253 0.92456 0.86849 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.08 36.00 0.36 -0.66 15 2 C 0.06 0.83 6.64 -35.90 -0.24 0.59 15 3 C -0.24 -3.86 9.05 -36.04 -0.33 -4.19 15 4 C 0.13 2.27 2.98 -27.80 -0.08 2.19 15 5 H 0.07 1.29 7.79 -51.93 -0.40 0.88 15 6 O -0.37 -8.39 9.96 -35.23 -0.35 -8.74 15 7 C 0.19 4.99 5.49 36.01 0.20 5.18 15 8 C -0.52 -14.66 9.43 -34.44 -0.32 -14.98 15 9 H 0.07 1.88 7.81 -52.49 -0.41 1.47 15 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 11 N -0.90 -25.96 13.29 55.43 0.74 -25.23 15 12 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 15 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 16 C -0.17 -2.50 6.06 -27.17 -0.16 -2.66 15 17 C 0.49 7.81 7.68 36.49 0.28 8.09 15 18 O -0.45 -7.94 17.97 -18.60 -0.33 -8.28 15 19 O -0.30 -4.61 10.16 -23.67 -0.24 -4.85 15 20 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.09 0.80 7.92 -51.93 -0.41 0.39 15 23 H 0.14 2.24 7.86 -52.49 -0.41 1.83 15 24 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 15 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 27 H 0.11 1.59 8.14 -51.93 -0.42 1.16 15 28 H 0.12 1.68 8.14 -51.93 -0.42 1.26 15 LS Contribution 253.60 15.07 3.82 3.82 Total: -1.00 -30.73 253.60 -5.09 -35.82 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -3.31 Total: -3.77 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.39 Total: -4.91 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.93 Total: -21.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.73 -5.09 -35.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611162.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.826 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds