Wall clock time and date at job start Sun Mar 29 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30534 * 118.19787 * 2 1 4 4 C 1.50402 * 123.19006 * 180.77671 * 3 2 1 5 5 H 1.09000 * 109.47806 * 100.86471 * 4 3 2 6 6 O 1.42896 * 109.49233 * 220.90227 * 4 3 2 7 7 C 1.42901 * 114.00184 * 269.93162 * 6 4 3 8 8 C 1.50704 * 109.46871 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99683 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00281 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.47243 * 59.99914 * 12 10 8 14 14 H 1.48502 * 109.47008 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46858 * 299.99483 * 12 10 8 16 16 C 1.53434 * 109.39695 * 340.89158 * 4 3 2 17 17 C 1.51686 * 107.37548 * 42.06909 * 16 4 3 18 18 O 1.20830 * 121.62209 * 123.78092 * 17 16 4 19 19 O 1.34986 * 116.76455 * 303.92186 * 17 16 4 20 20 H 1.08998 * 109.47531 * 89.99884 * 1 2 3 21 21 H 1.09003 * 109.47648 * 209.99841 * 1 2 3 22 22 H 1.09001 * 109.46967 * 329.99789 * 1 2 3 23 23 H 1.07998 * 118.40379 * 0.80062 * 3 2 1 24 24 H 1.08999 * 109.46687 * 300.00210 * 7 6 4 25 25 H 1.08996 * 109.46621 * 60.00516 * 7 6 4 26 26 H 0.97000 * 120.00473 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.88763 * 161.55951 * 16 4 3 28 28 H 1.09000 * 109.88708 * 282.57834 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1238 1.1504 0.0000 4 6 3.6220 1.2814 -0.0171 5 1 3.9551 1.5124 -1.0289 6 8 4.0189 2.3315 0.8670 7 6 4.0958 3.6162 0.2460 8 6 4.5214 4.6419 1.2648 9 1 4.7136 4.3426 2.2846 10 6 4.6645 5.9624 0.8952 11 7 4.4300 6.3269 -0.3465 12 14 5.1914 7.2339 2.1582 13 1 6.5232 6.8677 2.7034 14 1 5.2702 8.5692 1.5131 15 1 4.1990 7.2759 3.2621 16 6 4.2542 -0.0396 0.4407 17 6 3.4785 -1.1650 -0.2171 18 8 4.0260 -1.9949 -0.9038 19 8 2.1464 -1.1927 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.5294 2.0520 0.0133 24 1 4.8243 3.5851 -0.5641 25 1 3.1183 3.8852 -0.1543 26 1 4.5303 7.2560 -0.6065 27 1 5.2984 -0.0781 0.1304 28 1 4.1864 -0.1269 1.5251 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205611162.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:26 Heat of formation + Delta-G solvation = -129.639816 kcal Electronic energy + Delta-G solvation = -13794.388035 eV Core-core repulsion = 11196.494565 eV Total energy + Delta-G solvation = -2597.893470 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.62356 -39.38813 -38.82411 -35.26224 -34.44223 -33.03490 -29.34785 -28.27725 -25.08757 -24.40206 -24.07240 -19.89211 -18.82010 -18.47519 -18.11858 -17.66614 -17.00124 -16.38807 -15.82816 -15.37717 -14.97652 -14.78730 -14.29267 -14.22978 -13.53558 -13.31863 -13.23938 -12.97320 -12.88317 -12.56329 -12.44080 -12.07472 -11.61533 -11.27686 -10.93393 -10.33070 -9.74972 -8.31995 -6.44466 0.23390 1.04559 1.42390 1.46030 1.54466 1.74122 2.34101 2.71817 3.02556 3.29614 3.51614 3.73288 3.83036 4.28231 4.45266 4.51313 4.66438 4.72515 4.85404 4.86677 5.04824 5.18109 5.27260 5.54331 5.92431 5.95454 6.20940 6.44357 6.76328 7.26974 8.79666 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.049934 B = 0.006642 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.607576 B = 4214.579035 C = 4499.530270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.081 3.919 3 C -0.273 4.273 4 C 0.119 3.881 5 H 0.065 0.935 6 O -0.384 6.384 7 C 0.208 3.792 8 C -0.550 4.550 9 H 0.064 0.936 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.981 3.019 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.265 1.265 16 C -0.157 4.157 17 C 0.504 3.496 18 O -0.466 6.466 19 O -0.303 6.303 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.140 0.860 24 H -0.011 1.011 25 H -0.004 1.004 26 H 0.271 0.729 27 H 0.123 0.877 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -9.865 1.441 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.039 3.961 3 C -0.292 4.292 4 C 0.060 3.940 5 H 0.083 0.917 6 O -0.304 6.304 7 C 0.133 3.867 8 C -0.587 4.587 9 H 0.083 0.917 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.804 3.196 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.189 1.189 16 C -0.195 4.195 17 C 0.346 3.654 18 O -0.347 6.347 19 O -0.219 6.219 20 H 0.115 0.885 21 H 0.111 0.889 22 H 0.120 0.880 23 H 0.157 0.843 24 H 0.007 0.993 25 H 0.013 0.987 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.181 -10.332 1.195 12.099 hybrid contribution 0.435 0.918 -0.011 1.016 sum -5.746 -9.414 1.184 11.092 Atomic orbital electron populations 1.20983 0.84148 1.05554 1.05091 1.20949 0.95747 0.80655 0.98725 1.23107 0.97348 0.98653 1.10136 1.20694 0.91015 0.87879 0.94364 0.91710 1.87910 1.88529 1.17174 1.36777 1.19958 0.94289 0.79228 0.93221 1.21347 1.47568 0.92806 0.97028 0.91750 1.25900 0.94721 1.00347 0.97934 1.70051 1.49238 1.18790 1.18730 0.85265 0.79231 0.76853 0.78278 1.19122 1.20228 1.18937 1.22497 1.01730 0.90485 1.04759 1.23525 0.81067 0.84741 0.76104 1.90656 1.68864 1.41767 1.33419 1.84306 1.23048 1.33092 1.81458 0.88502 0.88913 0.88033 0.84263 0.99332 0.98652 0.92023 0.85847 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.08 71.23 0.72 -1.04 15 2 C 0.08 2.11 6.64 26.13 0.17 2.28 15 3 C -0.27 -8.50 9.05 26.03 0.24 -8.27 15 4 C 0.12 4.26 2.98 29.90 0.09 4.34 15 5 H 0.07 2.37 7.79 -2.39 -0.02 2.36 15 6 O -0.38 -17.54 9.96 -148.98 -1.48 -19.03 15 7 C 0.21 11.07 5.49 71.24 0.39 11.46 15 8 C -0.55 -31.42 9.43 25.60 0.24 -31.17 15 9 H 0.06 3.62 7.81 -2.91 -0.02 3.60 15 10 C 0.01 0.55 5.46 84.65 0.46 1.01 15 11 N -0.93 -54.16 13.29 21.45 0.28 -53.88 15 12 Si 0.98 42.92 29.54 68.60 2.03 44.95 15 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 14 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 15 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 16 C -0.16 -4.60 6.06 30.31 0.18 -4.41 15 17 C 0.50 15.28 7.68 71.55 0.55 15.83 15 18 O -0.47 -16.14 17.97 21.81 0.39 -15.75 15 19 O -0.30 -8.64 10.16 3.68 0.04 -8.60 15 20 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.10 1.56 7.92 -2.39 -0.02 1.54 15 23 H 0.14 4.41 7.86 -2.91 -0.02 4.39 15 24 H -0.01 -0.62 8.09 -2.39 -0.02 -0.64 15 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.12 3.36 8.14 -2.39 -0.02 3.35 15 28 H 0.13 3.56 8.14 -2.39 -0.02 3.54 15 Total: -1.00 -65.13 253.60 5.45 -59.68 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.15 Total: 2.59 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 3.04 Total: -9.96 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.28 Total: -53.88 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.05 Total: -43.38 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.13 5.45 -59.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611162.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.957 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds