Wall clock time and date at job start Sun Mar 29 2020 21:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48504 * 109.47422 * 240.00115 * 3 2 1 5 5 H 1.48498 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47335 * 119.99835 * 3 2 1 7 7 C 1.37880 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47145 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.42898 * 114.00186 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.09008 * 110.12388 * 306.67566 * 13 12 11 15 15 C 1.51086 * 110.14853 * 185.00024 * 13 12 11 16 16 C 1.33045 * 106.93804 * 240.86416 * 15 13 12 17 17 C 1.46533 * 109.52552 * 359.97438 * 16 15 13 18 18 O 1.21533 * 125.02672 * 179.97438 * 17 16 15 19 19 O 1.34617 * 109.94437 * 359.97438 * 17 16 15 20 20 H 0.96993 * 120.00477 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47182 * 59.99898 * 9 7 2 22 22 H 1.09000 * 109.47374 * 300.00185 * 9 7 2 23 23 H 1.09001 * 109.47081 * 60.00211 * 10 9 7 24 24 H 1.08999 * 109.47384 * 299.99904 * 10 9 7 25 25 H 1.09002 * 109.47259 * 300.00293 * 12 11 10 26 26 H 1.09001 * 109.47074 * 60.00315 * 12 11 10 27 27 H 1.08008 * 126.52545 * 60.82756 * 15 13 12 28 28 H 1.08000 * 125.23661 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5310 -4.8996 -0.0011 12 6 2.3710 -6.0556 -0.0018 13 6 1.5039 -7.3161 -0.0030 14 1 0.7874 -7.2793 0.8177 15 6 2.3730 -8.5458 0.1199 16 6 2.1713 -9.2741 -0.9751 17 6 1.2023 -8.5977 -1.8415 18 8 0.8146 -9.0165 -2.9145 19 8 0.8050 -7.4439 -1.2731 20 1 -0.4850 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8721 -3.6042 0.8895 24 1 2.8721 -3.6042 -0.8905 25 1 3.0003 -6.0471 -0.8918 26 1 3.0003 -6.0480 0.8882 27 1 3.0329 -8.7873 0.9402 28 1 2.6477 -10.2189 -1.1916 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:45 Heat of formation + Delta-G solvation = -107.202190 kcal Electronic energy + Delta-G solvation = -13327.367910 eV Core-core repulsion = 10730.447408 eV Total energy + Delta-G solvation = -2596.920502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.48948 -37.88993 -37.03349 -33.70709 -33.24043 -30.69022 -28.98729 -24.82033 -23.88377 -21.88479 -21.23176 -20.86252 -17.55700 -16.91349 -16.50107 -15.92471 -15.48143 -15.21512 -14.57988 -14.36609 -13.90596 -13.67288 -12.72235 -12.45786 -12.20815 -12.13652 -11.26711 -11.02729 -10.86560 -10.54848 -10.51600 -10.38196 -9.98847 -9.54339 -9.25138 -9.07891 -8.38739 -6.05231 -4.09657 0.62447 2.67265 3.01022 3.30611 3.35103 3.36775 3.60638 3.71891 4.24459 4.44338 4.75759 4.92513 5.03252 5.27760 5.30660 5.35251 5.53396 5.64208 6.13606 6.18434 6.56609 6.80210 7.34750 7.42549 7.73335 7.75176 8.03351 8.31367 8.96628 9.54198 11.06336 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.070303 B = 0.004977 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.178928 B = 5624.950299 C = 5792.585741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.384 6.384 12 C 0.062 3.938 13 C 0.085 3.915 14 H 0.137 0.863 15 C -0.105 4.105 16 C -0.230 4.230 17 C 0.487 3.513 18 O -0.461 6.461 19 O -0.304 6.304 20 H 0.263 0.737 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -16.168 3.227 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.303 6.303 12 C -0.016 4.016 13 C 0.029 3.971 14 H 0.154 0.846 15 C -0.124 4.124 16 C -0.249 4.249 17 C 0.330 3.670 18 O -0.348 6.348 19 O -0.219 6.219 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.195 0.805 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.093 -16.051 2.633 17.370 hybrid contribution 0.875 0.818 0.114 1.203 sum 6.968 -15.234 2.747 16.975 Atomic orbital electron populations 1.69965 1.06089 1.26976 1.49806 1.24998 0.94887 0.99325 0.95046 0.86572 0.79500 0.82768 0.78634 1.20148 1.21159 1.20172 1.20995 0.92952 0.90521 1.52053 0.92572 1.19075 0.94238 0.89273 0.98647 1.22961 0.96542 0.82717 0.98432 1.87994 1.33406 1.13604 1.95318 1.22446 0.92249 0.85377 1.01503 1.22828 0.94673 0.94098 0.85484 0.84621 1.24910 0.95731 0.93533 0.98200 1.24002 1.01571 1.03130 0.96209 1.21459 0.80072 0.79980 0.85484 1.90888 1.57583 1.66220 1.20083 1.87651 1.61393 1.39243 1.33581 0.92712 0.95552 0.95651 0.94368 0.94413 0.92649 0.91095 0.80486 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.18 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.66 5.34 -27.89 -0.15 0.51 15 10 C 0.07 1.45 5.88 37.16 0.22 1.67 15 11 O -0.38 -7.41 10.34 -35.41 -0.37 -7.78 15 12 C 0.06 0.82 5.66 37.16 0.21 1.03 15 13 C 0.08 0.95 3.95 -27.70 -0.11 0.84 15 14 H 0.14 1.33 8.14 -51.92 -0.42 0.91 15 15 C -0.11 -0.73 10.51 -35.92 -0.38 -1.11 15 16 C -0.23 -2.03 10.85 -38.04 -0.41 -2.44 15 17 C 0.49 6.94 8.56 34.07 0.29 7.24 15 18 O -0.46 -8.16 18.04 -18.94 -0.34 -8.50 15 19 O -0.30 -4.72 10.94 -41.32 -0.45 -5.17 15 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.18 0.51 8.06 -52.48 -0.42 0.09 15 28 H 0.17 1.03 8.06 -52.49 -0.42 0.60 15 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -34.27 257.96 -5.64 -39.91 By element: Atomic # 1 Polarization: -3.39 SS G_CDS: -3.35 Total: -6.73 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.74 Total: -5.87 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.16 Total: -21.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.27 -5.64 -39.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.291 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds