Wall clock time and date at job start Sun Mar 29 2020 21:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48504 * 109.47422 * 240.00115 * 3 2 1 5 5 H 1.48498 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47335 * 119.99835 * 3 2 1 7 7 C 1.37880 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47145 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.42898 * 114.00186 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.09008 * 110.12388 * 306.67566 * 13 12 11 15 15 C 1.51086 * 110.14853 * 185.00024 * 13 12 11 16 16 C 1.33045 * 106.93804 * 240.86416 * 15 13 12 17 17 C 1.46533 * 109.52552 * 359.97438 * 16 15 13 18 18 O 1.21533 * 125.02672 * 179.97438 * 17 16 15 19 19 O 1.34617 * 109.94437 * 359.97438 * 17 16 15 20 20 H 0.96993 * 120.00477 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47182 * 59.99898 * 9 7 2 22 22 H 1.09000 * 109.47374 * 300.00185 * 9 7 2 23 23 H 1.09001 * 109.47081 * 60.00211 * 10 9 7 24 24 H 1.08999 * 109.47384 * 299.99904 * 10 9 7 25 25 H 1.09002 * 109.47259 * 300.00293 * 12 11 10 26 26 H 1.09001 * 109.47074 * 60.00315 * 12 11 10 27 27 H 1.08008 * 126.52545 * 60.82756 * 15 13 12 28 28 H 1.08000 * 125.23661 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5310 -4.8996 -0.0011 12 6 2.3710 -6.0556 -0.0018 13 6 1.5039 -7.3161 -0.0030 14 1 0.7874 -7.2793 0.8177 15 6 2.3730 -8.5458 0.1199 16 6 2.1713 -9.2741 -0.9751 17 6 1.2023 -8.5977 -1.8415 18 8 0.8146 -9.0165 -2.9145 19 8 0.8050 -7.4439 -1.2731 20 1 -0.4850 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8721 -3.6042 0.8895 24 1 2.8721 -3.6042 -0.8905 25 1 3.0003 -6.0471 -0.8918 26 1 3.0003 -6.0480 0.8882 27 1 3.0329 -8.7873 0.9402 28 1 2.6477 -10.2189 -1.1916 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:44 Heat of formation + Delta-G solvation = -131.400356 kcal Electronic energy + Delta-G solvation = -13328.417221 eV Core-core repulsion = 10730.447408 eV Total energy + Delta-G solvation = -2597.969813 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.47073 -39.16737 -38.36767 -35.39782 -34.50435 -32.36599 -30.37737 -26.68303 -25.03338 -23.03065 -22.54737 -22.13227 -18.77173 -18.48033 -17.80632 -17.07023 -17.00252 -16.61674 -16.39305 -15.38265 -15.25137 -14.50269 -14.31563 -14.06053 -13.77781 -13.22173 -12.84303 -12.81122 -12.44370 -12.17790 -12.04282 -11.60199 -11.49303 -11.38279 -10.75195 -10.68371 -10.45977 -8.23771 -6.37534 -0.13135 1.41393 1.45597 1.53568 1.74617 2.07292 2.36309 2.63892 2.99572 3.10233 3.30585 3.78614 3.95175 4.34684 4.41503 4.47943 4.52200 4.60532 4.75452 4.92804 5.06628 5.36033 5.56922 5.61851 5.72232 6.09614 6.30987 6.36182 6.79144 7.32704 8.89217 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.070303 B = 0.004977 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.178928 B = 5624.950299 C = 5792.585741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.024 3.976 10 C 0.086 3.914 11 O -0.415 6.415 12 C 0.053 3.947 13 C 0.070 3.930 14 H 0.150 0.850 15 C -0.051 4.051 16 C -0.239 4.239 17 C 0.474 3.526 18 O -0.517 6.517 19 O -0.348 6.348 20 H 0.266 0.734 21 H -0.014 1.014 22 H -0.003 1.003 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.236 0.764 28 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 -16.746 4.960 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.013 4.013 10 C 0.011 3.989 11 O -0.335 6.335 12 C -0.023 4.023 13 C 0.016 3.984 14 H 0.167 0.833 15 C -0.069 4.069 16 C -0.258 4.258 17 C 0.320 3.680 18 O -0.407 6.407 19 O -0.264 6.264 20 H 0.074 0.926 21 H 0.005 0.995 22 H 0.016 0.984 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.133 0.867 27 H 0.252 0.748 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.940 -16.650 4.389 19.402 hybrid contribution -0.064 0.978 -0.379 1.051 sum 8.876 -15.672 4.010 18.452 Atomic orbital electron populations 1.70125 1.08164 1.28175 1.50895 1.26086 0.95799 1.03829 0.94306 0.85344 0.78095 0.77190 0.79466 1.19022 1.20997 1.18471 1.21468 0.93869 0.91343 1.51756 0.91029 1.18961 0.94801 0.92191 0.95382 1.22505 0.94645 0.82051 0.99741 1.87923 1.35368 1.14592 1.95630 1.22842 0.92369 0.83555 1.03576 1.23200 0.95722 0.95322 0.84194 0.83314 1.25324 0.93522 0.89681 0.98359 1.23976 1.01426 1.04678 0.95692 1.22420 0.80353 0.79790 0.85391 1.90836 1.59812 1.67455 1.22623 1.87601 1.62751 1.40474 1.35598 0.92572 0.99532 0.98425 0.91979 0.93903 0.92631 0.86679 0.74751 0.78455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.61 15 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 15 3 Si 0.98 43.69 29.54 68.60 2.03 45.72 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 7 C -0.55 -31.05 9.11 25.60 0.23 -30.81 15 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 15 9 C 0.02 1.32 5.34 29.84 0.16 1.48 15 10 C 0.09 3.59 5.88 71.98 0.42 4.01 15 11 O -0.41 -15.83 10.34 -148.81 -1.54 -17.37 15 12 C 0.05 1.25 5.66 71.98 0.41 1.66 15 13 C 0.07 1.41 3.95 29.97 0.12 1.53 15 14 H 0.15 2.58 8.14 -2.38 -0.02 2.56 15 15 C -0.05 -0.47 10.51 24.65 0.26 -0.21 15 16 C -0.24 -3.52 10.85 23.27 0.25 -3.27 15 17 C 0.47 13.67 8.56 69.98 0.60 14.27 15 18 O -0.52 -19.29 18.04 19.40 0.35 -18.94 15 19 O -0.35 -11.02 10.94 -54.25 -0.59 -11.62 15 20 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 21 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 15 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.06 1.32 8.14 -2.39 -0.02 1.31 15 26 H 0.12 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.24 -0.52 8.06 -2.91 -0.02 -0.54 15 28 H 0.20 1.67 8.06 -2.91 -0.02 1.65 15 Total: -1.00 -80.19 257.96 4.59 -75.60 By element: Atomic # 1 Polarization: -5.92 SS G_CDS: 1.14 Total: -4.78 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 2.91 Total: -11.00 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.78 Total: -47.93 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.19 4.59 -75.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.803 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds