Wall clock time and date at job start Sun Mar 29 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 N 1.46905 * 109.47183 * 179.45102 * 3 2 1 5 5 C 1.46908 * 110.99622 * 297.51926 * 4 3 2 6 6 C 1.50697 * 109.46691 * 292.81849 * 5 4 3 7 7 H 1.07996 * 120.00673 * 354.99811 * 6 5 4 8 8 C 1.37884 * 119.99351 * 174.98837 * 6 5 4 9 9 N 1.31513 * 120.00352 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99700 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47115 * 90.00416 * 10 8 6 12 12 H 1.48504 * 109.47055 * 210.00489 * 10 8 6 13 13 H 1.48504 * 109.47022 * 330.00308 * 10 8 6 14 14 C 1.46900 * 110.99955 * 61.47068 * 4 3 2 15 15 C 1.52998 * 109.47386 * 66.04683 * 14 4 3 16 16 C 1.52993 * 109.47250 * 179.97438 * 15 14 4 17 17 C 1.53004 * 117.50196 * 243.74676 * 16 15 14 18 18 C 1.52998 * 117.49672 * 175.08874 * 16 15 14 19 19 H 1.09005 * 109.46712 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47133 * 299.99664 * 1 2 3 21 21 H 1.08999 * 109.47344 * 60.00038 * 1 2 3 22 22 H 1.08998 * 109.47133 * 240.00336 * 2 1 3 23 23 H 1.08999 * 109.47344 * 119.99962 * 2 1 3 24 24 H 1.08990 * 109.47442 * 59.44971 * 3 2 1 25 25 H 1.09006 * 109.47197 * 299.44620 * 3 2 1 26 26 H 1.08995 * 109.47179 * 52.82373 * 5 4 3 27 27 H 1.09002 * 109.46349 * 172.82082 * 5 4 3 28 28 H 0.97000 * 119.99904 * 179.97438 * 9 8 6 29 29 H 1.09004 * 109.47082 * 306.04450 * 14 4 3 30 30 H 1.09000 * 109.47131 * 186.05057 * 14 4 3 31 31 H 1.09000 * 109.47291 * 300.00276 * 15 14 4 32 32 H 1.09005 * 109.46680 * 59.99887 * 15 14 4 33 33 H 1.09004 * 115.55119 * 29.41895 * 16 15 14 34 34 H 1.08999 * 117.49326 * 0.02562 * 17 16 15 35 35 H 1.08997 * 117.50003 * 145.01824 * 17 16 15 36 36 H 1.08999 * 117.49880 * 214.97809 * 18 16 15 37 37 H 1.09001 * 117.50259 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0133 5 6 4.0243 0.8129 1.2363 6 6 3.6790 1.6702 2.4266 7 1 3.2034 2.6290 2.2818 8 6 3.9702 1.2305 3.7005 9 7 4.5497 0.0632 3.8769 10 14 3.5416 2.2929 5.1760 11 1 2.1714 1.9619 5.6429 12 1 4.5128 2.0361 6.2698 13 1 3.6000 3.7252 4.7884 14 6 4.0463 0.7838 -1.1847 15 6 3.6934 1.6104 -2.4230 16 6 4.2536 0.9245 -3.6706 17 6 5.3248 1.6723 -4.4671 18 6 3.9074 1.5373 -5.0291 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6686 1.9592 0.8849 25 1 1.6847 1.9535 -0.8949 26 1 3.5738 -0.1725 1.3553 27 1 5.1071 0.7109 1.1638 28 1 4.7549 -0.2460 4.7732 29 1 3.6128 -0.2120 -1.2770 30 1 5.1298 0.7019 -1.0992 31 1 2.6099 1.6923 -2.5085 32 1 4.1269 2.6062 -2.3306 33 1 4.3346 -0.1610 -3.6140 34 1 5.6308 2.6526 -4.1019 35 1 6.1103 1.0787 -4.9347 36 1 3.7611 0.8549 -5.8664 37 1 3.2803 2.4288 -5.0340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208683498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:56 Heat of formation + Delta-G solvation = 8.559985 kcal Electronic energy + Delta-G solvation = -14300.183290 eV Core-core repulsion = 12077.667464 eV Total energy + Delta-G solvation = -2222.515826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.11480 -36.73602 -32.77164 -32.18118 -29.83701 -26.66430 -25.13867 -22.55465 -22.28251 -22.05232 -20.17865 -18.96489 -16.17773 -15.61079 -15.07762 -14.89491 -14.44902 -13.98747 -13.44928 -13.12285 -12.82776 -12.41807 -11.74333 -11.52492 -11.43371 -11.18297 -11.02723 -10.93055 -10.85251 -10.66663 -10.59914 -10.39523 -10.15844 -9.89054 -9.81046 -9.39260 -9.10559 -8.38821 -7.06935 -5.98351 -3.99000 3.33862 3.40080 3.44666 3.89552 4.45425 4.72718 5.02821 5.04675 5.24367 5.36928 5.52846 5.55293 5.59110 5.66077 5.75872 5.87201 5.92393 6.02836 6.13398 6.15803 6.17909 6.23328 6.39229 6.46288 6.54823 6.62059 6.67360 6.82268 7.01159 7.38918 7.49926 7.87098 8.17531 8.28253 8.63472 9.09479 9.64932 11.12316 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.007175 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.752416 B = 3901.697791 C = 4377.060163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.538 5.538 5 C 0.188 3.812 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.055 3.945 15 C -0.084 4.084 16 C -0.146 4.146 17 C -0.182 4.182 18 C -0.186 4.186 19 H 0.044 0.956 20 H 0.053 0.947 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.002 0.998 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 0.808 -12.762 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.260 5.260 5 C 0.063 3.937 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.074 4.074 15 C -0.122 4.122 16 C -0.165 4.165 17 C -0.219 4.219 18 C -0.223 4.223 19 H 0.063 0.937 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.191 1.195 -12.607 13.060 hybrid contribution -0.397 -0.473 0.875 1.071 sum -3.588 0.722 -11.732 12.290 Atomic orbital electron populations 1.21652 0.96579 1.00614 1.01166 1.22171 0.95456 1.00587 1.02091 1.22052 0.88746 0.94326 1.01136 1.62326 1.06238 1.54772 1.02708 1.19776 0.95014 0.93503 0.85394 1.21167 1.38849 1.04019 0.90111 0.91982 1.24981 0.95496 0.95167 0.98996 1.69959 1.42687 1.19296 1.22065 0.86540 0.78011 0.80857 0.82272 1.20798 1.21326 1.19802 1.22039 0.99719 0.95054 0.90583 1.21191 1.00242 0.99128 0.91625 1.22361 1.02806 0.99021 0.92279 1.23021 0.92039 1.02246 1.04575 1.22941 0.98920 1.03237 0.97177 0.93695 0.92756 0.93551 0.92995 0.90730 0.90332 0.92974 0.98006 0.95889 0.93030 0.95567 0.91724 0.91900 0.91385 0.88177 0.88774 0.89289 0.89326 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.16 -2.99 5.28 -26.73 -0.14 -3.14 16 3 C 0.07 1.29 4.95 -3.82 -0.02 1.27 16 4 N -0.54 -11.70 4.69 -236.06 -1.11 -12.81 16 5 C 0.19 4.93 4.54 -4.97 -0.02 4.91 16 6 C -0.50 -14.21 8.39 -34.44 -0.29 -14.50 16 7 H 0.06 1.75 7.38 -52.49 -0.39 1.36 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 C 0.05 1.00 4.70 -3.82 -0.02 0.98 16 15 C -0.08 -1.27 5.42 -26.74 -0.14 -1.42 16 16 C -0.15 -1.88 5.73 -90.62 -0.52 -2.40 16 17 C -0.18 -2.09 10.18 -26.69 -0.27 -2.37 16 18 C -0.19 -2.04 10.25 -26.70 -0.27 -2.32 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 23 H 0.07 1.60 6.28 -51.93 -0.33 1.28 16 24 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 25 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 26 H 0.00 0.06 6.02 -51.93 -0.31 -0.25 16 27 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.48 6.06 -51.93 -0.31 0.16 16 30 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 31 H 0.06 0.94 6.52 -51.93 -0.34 0.60 16 32 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 33 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 34 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -29.13 292.61 -8.85 -37.98 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.44 Total: -0.89 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.43 Total: -19.31 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.37 Total: -39.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.13 -8.85 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208683498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.539 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds