Wall clock time and date at job start Sun Mar 29 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 N 1.46905 * 109.47183 * 179.45102 * 3 2 1 5 5 C 1.46908 * 110.99622 * 297.51926 * 4 3 2 6 6 C 1.50697 * 109.46691 * 292.81849 * 5 4 3 7 7 H 1.07996 * 120.00673 * 354.99811 * 6 5 4 8 8 C 1.37884 * 119.99351 * 174.98837 * 6 5 4 9 9 N 1.31513 * 120.00352 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99700 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47115 * 90.00416 * 10 8 6 12 12 H 1.48504 * 109.47055 * 210.00489 * 10 8 6 13 13 H 1.48504 * 109.47022 * 330.00308 * 10 8 6 14 14 C 1.46900 * 110.99955 * 61.47068 * 4 3 2 15 15 C 1.52998 * 109.47386 * 66.04683 * 14 4 3 16 16 C 1.52993 * 109.47250 * 179.97438 * 15 14 4 17 17 C 1.53004 * 117.50196 * 243.74676 * 16 15 14 18 18 C 1.52998 * 117.49672 * 175.08874 * 16 15 14 19 19 H 1.09005 * 109.46712 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47133 * 299.99664 * 1 2 3 21 21 H 1.08999 * 109.47344 * 60.00038 * 1 2 3 22 22 H 1.08998 * 109.47133 * 240.00336 * 2 1 3 23 23 H 1.08999 * 109.47344 * 119.99962 * 2 1 3 24 24 H 1.08990 * 109.47442 * 59.44971 * 3 2 1 25 25 H 1.09006 * 109.47197 * 299.44620 * 3 2 1 26 26 H 1.08995 * 109.47179 * 52.82373 * 5 4 3 27 27 H 1.09002 * 109.46349 * 172.82082 * 5 4 3 28 28 H 0.97000 * 119.99904 * 179.97438 * 9 8 6 29 29 H 1.09004 * 109.47082 * 306.04450 * 14 4 3 30 30 H 1.09000 * 109.47131 * 186.05057 * 14 4 3 31 31 H 1.09000 * 109.47291 * 300.00276 * 15 14 4 32 32 H 1.09005 * 109.46680 * 59.99887 * 15 14 4 33 33 H 1.09004 * 115.55119 * 29.41895 * 16 15 14 34 34 H 1.08999 * 117.49326 * 0.02562 * 17 16 15 35 35 H 1.08997 * 117.50003 * 145.01824 * 17 16 15 36 36 H 1.08999 * 117.49880 * 214.97809 * 18 16 15 37 37 H 1.09001 * 117.50259 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0133 5 6 4.0243 0.8129 1.2363 6 6 3.6790 1.6702 2.4266 7 1 3.2034 2.6290 2.2818 8 6 3.9702 1.2305 3.7005 9 7 4.5497 0.0632 3.8769 10 14 3.5416 2.2929 5.1760 11 1 2.1714 1.9619 5.6429 12 1 4.5128 2.0361 6.2698 13 1 3.6000 3.7252 4.7884 14 6 4.0463 0.7838 -1.1847 15 6 3.6934 1.6104 -2.4230 16 6 4.2536 0.9245 -3.6706 17 6 5.3248 1.6723 -4.4671 18 6 3.9074 1.5373 -5.0291 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6686 1.9592 0.8849 25 1 1.6847 1.9535 -0.8949 26 1 3.5738 -0.1725 1.3553 27 1 5.1071 0.7109 1.1638 28 1 4.7549 -0.2460 4.7732 29 1 3.6128 -0.2120 -1.2770 30 1 5.1298 0.7019 -1.0992 31 1 2.6099 1.6923 -2.5085 32 1 4.1269 2.6062 -2.3306 33 1 4.3346 -0.1610 -3.6140 34 1 5.6308 2.6526 -4.1019 35 1 6.1103 1.0787 -4.9347 36 1 3.7611 0.8549 -5.8664 37 1 3.2803 2.4288 -5.0340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208683498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:55 Heat of formation + Delta-G solvation = -8.350736 kcal Electronic energy + Delta-G solvation = -14300.916594 eV Core-core repulsion = 12077.667464 eV Total energy + Delta-G solvation = -2223.249130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56323 -37.96229 -34.86567 -33.66407 -31.42720 -28.54900 -26.74768 -24.30466 -23.60339 -23.15423 -21.33628 -20.57069 -18.36186 -17.05975 -16.57529 -16.36428 -16.11612 -15.37603 -14.97598 -14.52288 -14.25654 -14.20916 -13.36840 -13.15746 -12.76310 -12.67458 -12.45561 -12.41779 -12.29819 -12.27191 -12.14245 -11.98391 -11.81093 -11.34663 -11.30284 -10.96310 -10.62371 -10.56238 -8.85737 -8.18343 -6.28051 1.40312 1.41700 1.53353 2.40897 2.95735 3.13819 3.34861 3.94297 4.03816 4.07274 4.14496 4.19007 4.36063 4.42339 4.52558 4.65468 4.71811 4.82578 4.83528 4.91466 5.04977 5.05865 5.10417 5.17394 5.20137 5.23563 5.32412 5.33239 5.43515 5.47101 5.55831 5.69751 6.10345 6.40678 6.71244 6.89228 7.41429 8.92264 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.007175 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.752416 B = 3901.697791 C = 4377.060163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C 0.068 3.932 4 N -0.548 5.548 5 C 0.204 3.796 6 C -0.519 4.519 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.057 3.943 15 C -0.070 4.070 16 C -0.164 4.164 17 C -0.183 4.183 18 C -0.168 4.168 19 H 0.057 0.943 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.083 0.917 26 H -0.021 1.021 27 H -0.008 1.008 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 1.684 -14.003 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C -0.060 4.060 4 N -0.270 5.270 5 C 0.078 3.922 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.071 4.071 15 C -0.108 4.108 16 C -0.183 4.183 17 C -0.220 4.220 18 C -0.205 4.205 19 H 0.076 0.924 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.101 0.899 26 H -0.004 1.004 27 H 0.010 0.990 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.392 2.078 -13.872 14.698 hybrid contribution 0.000 -0.768 1.203 1.428 sum -4.392 1.310 -12.669 13.472 Atomic orbital electron populations 1.21607 0.93783 1.01865 1.02123 1.22053 0.97884 0.99130 1.00484 1.22070 0.87194 0.95278 1.01464 1.62242 1.07900 1.54709 1.02178 1.19408 0.92954 0.92516 0.87353 1.21447 1.38898 1.04124 0.91227 0.92222 1.25889 0.95149 0.96443 1.02141 1.70089 1.43611 1.21023 1.22932 0.85424 0.78061 0.79146 0.78252 1.19774 1.20774 1.18979 1.22088 0.98756 0.95692 0.90606 1.21030 1.00659 0.98203 0.90900 1.22254 1.04720 0.99004 0.92301 1.23107 0.92740 1.02016 1.04137 1.23030 0.98189 1.03259 0.96023 0.92363 0.93332 0.91017 0.91989 0.94894 0.92589 0.89896 1.00373 0.98991 0.92795 0.95461 0.93114 0.91249 0.92048 0.88157 0.89057 0.88123 0.87611 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.16 -5.68 5.28 30.60 0.16 -5.52 16 3 C 0.07 2.63 4.95 86.30 0.43 3.06 16 4 N -0.55 -24.28 4.69 -900.77 -4.23 -28.51 16 5 C 0.20 11.17 4.54 85.55 0.39 11.56 16 6 C -0.52 -30.08 8.39 25.60 0.21 -29.87 16 7 H 0.06 3.41 7.38 -2.91 -0.02 3.39 16 8 C 0.00 0.08 5.46 84.66 0.46 0.54 16 9 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 10 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.06 2.09 4.70 86.30 0.41 2.50 16 15 C -0.07 -2.03 5.42 30.59 0.17 -1.86 16 16 C -0.16 -3.92 5.73 -10.80 -0.06 -3.98 16 17 C -0.18 -3.83 10.18 30.62 0.31 -3.52 16 18 C -0.17 -3.19 10.25 30.62 0.31 -2.88 16 19 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 2.10 6.34 -2.39 -0.02 2.08 16 23 H 0.03 1.46 6.28 -2.39 -0.02 1.44 16 24 H 0.06 2.41 6.98 -2.39 -0.02 2.40 16 25 H 0.08 2.71 6.40 -2.38 -0.02 2.69 16 26 H -0.02 -1.25 6.02 -2.39 -0.01 -1.27 16 27 H -0.01 -0.48 7.91 -2.39 -0.02 -0.50 16 28 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.03 1.00 6.06 -2.39 -0.01 0.99 16 30 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 31 H 0.07 1.90 6.52 -2.39 -0.02 1.88 16 32 H 0.06 1.85 7.87 -2.38 -0.02 1.84 16 33 H 0.10 2.40 8.08 -2.38 -0.02 2.38 16 34 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -63.68 292.61 2.60 -61.09 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.01 Total: 10.54 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 3.50 Total: -33.13 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -3.94 Total: -85.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.68 2.60 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208683498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.737 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds