Wall clock time and date at job start Sun Mar 29 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47391 * 2 1 4 4 N 1.46898 * 109.47591 * 185.07057 * 3 2 1 5 5 C 1.46901 * 111.00131 * 164.68341 * 4 3 2 6 6 C 1.50700 * 109.47134 * 293.95304 * 5 4 3 7 7 H 1.08002 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00045 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00115 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99699 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.46931 * 90.00183 * 10 8 6 12 12 H 1.48501 * 109.46420 * 210.00303 * 10 8 6 13 13 H 1.48496 * 109.47006 * 329.99859 * 10 8 6 14 14 C 1.46902 * 110.99834 * 288.63811 * 4 3 2 15 15 C 1.52999 * 109.47206 * 164.55582 * 14 4 3 16 16 H 1.08998 * 115.55246 * 330.32464 * 15 14 4 17 17 C 1.53003 * 117.49633 * 116.02451 * 15 14 4 18 18 C 1.52999 * 117.49825 * 184.64836 * 15 14 4 19 19 H 1.09005 * 117.49393 * 145.02672 * 18 15 14 20 20 C 1.52994 * 117.49971 * 0.02799 * 18 15 14 21 21 H 1.08996 * 109.47201 * 60.00082 * 1 2 3 22 22 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47109 * 300.00616 * 1 2 3 24 24 H 1.08997 * 109.47661 * 239.99618 * 2 1 3 25 25 H 1.09004 * 109.47176 * 119.99611 * 2 1 3 26 26 H 1.09000 * 109.46718 * 305.07068 * 3 2 1 27 27 H 1.09000 * 109.47531 * 65.06343 * 3 2 1 28 28 H 1.08997 * 109.46880 * 53.95670 * 5 4 3 29 29 H 1.09001 * 109.46594 * 173.95573 * 5 4 3 30 30 H 0.97000 * 119.99969 * 179.97438 * 9 8 6 31 31 H 1.08990 * 109.47128 * 284.56063 * 14 4 3 32 32 H 1.09001 * 109.47301 * 44.55996 * 14 4 3 33 33 H 1.08997 * 117.49955 * 214.98073 * 17 15 14 34 34 H 1.09002 * 117.49667 * 0.02562 * 17 15 14 35 35 H 1.08996 * 109.47176 * 59.99732 * 20 18 15 36 36 H 1.09004 * 109.47133 * 180.02562 * 20 18 15 37 37 H 1.09002 * 109.46857 * 299.99534 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5039 1.4444 -0.1224 5 6 3.9999 2.7779 -0.4881 6 6 3.5238 3.1281 -1.8744 7 1 2.9141 2.4298 -2.4285 8 6 3.8675 4.3396 -2.4357 9 7 3.4525 4.6451 -3.6456 10 14 4.9239 5.5466 -1.4781 11 1 6.3572 5.2876 -1.7674 12 1 4.5801 6.9337 -1.8817 13 1 4.6739 5.3778 -0.0241 14 6 4.1362 0.9686 1.1153 15 6 5.5995 0.6180 0.8382 16 1 5.8180 0.2781 -0.1741 17 6 6.6713 1.4429 1.5536 18 6 6.4059 -0.0021 1.9811 19 1 7.1553 -0.7496 1.7205 20 6 5.6872 -0.2246 3.3133 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6044 1.9819 -0.8411 27 1 1.7527 1.9296 0.9318 28 1 3.6226 3.5133 0.2223 29 1 5.0897 2.7783 -0.4673 30 1 3.6940 5.4976 -4.0404 31 1 4.0872 1.7511 1.8723 32 1 3.6120 0.0828 1.4739 33 1 7.5950 1.6460 1.0119 34 1 6.3338 2.2352 2.2219 35 1 4.8405 -0.8940 3.1619 36 1 6.3787 -0.6687 4.0294 37 1 5.3307 0.7311 3.6977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209420740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:59 Heat of formation + Delta-G solvation = 10.519333 kcal Electronic energy + Delta-G solvation = -14467.161694 eV Core-core repulsion = 12244.730832 eV Total energy + Delta-G solvation = -2222.430862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.39395 -36.25803 -33.01936 -32.04121 -28.62712 -28.02758 -26.36401 -23.89201 -21.24167 -21.10311 -20.13509 -18.86845 -16.82184 -15.69214 -14.95783 -14.61457 -14.15426 -13.62299 -13.52449 -13.15733 -12.75613 -12.48200 -12.32285 -12.14464 -11.80076 -11.56196 -11.27476 -11.12862 -10.80539 -10.76594 -10.47712 -10.21765 -10.03944 -9.85764 -9.58406 -9.32715 -9.15665 -8.52863 -7.31361 -6.01959 -3.98320 3.30583 3.37660 3.40669 4.02700 4.45133 4.70073 4.96557 5.14663 5.25127 5.31820 5.42346 5.47177 5.58304 5.76315 5.83417 5.89249 5.91025 6.02565 6.04291 6.09945 6.10583 6.21718 6.28064 6.32113 6.44472 6.47697 6.66196 6.74736 6.83191 6.99941 7.08144 7.67199 7.99284 8.14967 8.71281 9.07201 9.60684 11.11258 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.011312 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.616148 B = 2474.717130 C = 3656.655501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.527 5.527 5 C 0.163 3.837 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.084 3.916 15 C -0.128 4.128 16 H 0.113 0.887 17 C -0.181 4.181 18 C -0.162 4.162 19 H 0.099 0.901 20 C -0.119 4.119 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.016 0.984 28 H -0.016 1.016 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -8.264 11.670 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.250 5.250 5 C 0.037 3.963 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.044 4.044 15 C -0.146 4.146 16 H 0.131 0.869 17 C -0.218 4.218 18 C -0.181 4.181 19 H 0.117 0.883 20 C -0.176 4.176 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.002 0.998 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.465 -8.427 11.154 14.056 hybrid contribution 0.492 1.399 1.012 1.796 sum 1.958 -7.027 12.166 14.186 Atomic orbital electron populations 1.21727 0.96437 1.00815 1.01699 1.21542 0.94649 0.97744 1.01724 1.22058 0.88558 0.95603 1.00507 1.61903 1.04704 1.28681 1.29760 1.20167 0.95646 0.84093 0.96443 1.21079 1.32619 1.02349 0.98497 0.90137 1.24888 0.95871 0.97819 0.94753 1.69894 1.46261 1.23245 1.14714 0.86891 0.81340 0.80811 0.80929 1.20156 1.21299 1.19305 1.21618 0.92594 0.98498 0.91693 1.22395 0.92495 1.02651 0.97076 0.86925 1.23144 1.01033 0.93536 1.04131 1.22359 1.02927 0.96437 0.96332 0.88283 1.21302 0.99727 1.01544 0.95060 0.92465 0.93298 0.93361 0.91274 0.93176 0.89120 0.96606 0.99822 0.95361 0.92752 0.95978 0.91380 0.89191 0.89316 0.92331 0.92740 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.12 -1.89 5.89 -26.73 -0.16 -2.05 16 3 C 0.06 1.18 4.81 -3.82 -0.02 1.17 16 4 N -0.53 -11.17 4.42 -236.07 -1.04 -12.21 16 5 C 0.16 4.02 3.64 -4.98 -0.02 4.00 16 6 C -0.51 -14.55 8.85 -34.44 -0.30 -14.86 16 7 H 0.08 2.51 7.49 -52.49 -0.39 2.11 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 10 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 14 C 0.08 1.48 4.17 -3.82 -0.02 1.47 16 15 C -0.13 -2.10 4.97 -90.62 -0.45 -2.55 16 16 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 17 C -0.18 -2.74 9.81 -26.73 -0.26 -3.00 16 18 C -0.16 -2.15 6.41 -90.62 -0.58 -2.73 16 19 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 20 C -0.12 -1.37 9.20 37.15 0.34 -1.03 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.73 6.70 -51.93 -0.35 0.39 16 26 H 0.09 2.01 6.59 -51.93 -0.34 1.67 16 27 H 0.02 0.30 8.06 -51.93 -0.42 -0.12 16 28 H -0.02 -0.40 7.18 -51.93 -0.37 -0.78 16 29 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 32 H 0.07 1.08 5.99 -51.93 -0.31 0.77 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.34 7.94 -51.93 -0.41 0.93 16 35 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 LS Contribution 293.32 15.07 4.42 4.42 Total: -1.00 -29.96 293.32 -8.43 -38.39 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.72 Total: -1.37 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.19 Total: -19.34 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.27 Total: -39.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.96 -8.43 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.905 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds