Wall clock time and date at job start Sun Mar 29 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47391 * 2 1 4 4 N 1.46898 * 109.47591 * 185.07057 * 3 2 1 5 5 C 1.46901 * 111.00131 * 164.68341 * 4 3 2 6 6 C 1.50700 * 109.47134 * 293.95304 * 5 4 3 7 7 H 1.08002 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00045 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00115 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99699 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.46931 * 90.00183 * 10 8 6 12 12 H 1.48501 * 109.46420 * 210.00303 * 10 8 6 13 13 H 1.48496 * 109.47006 * 329.99859 * 10 8 6 14 14 C 1.46902 * 110.99834 * 288.63811 * 4 3 2 15 15 C 1.52999 * 109.47206 * 164.55582 * 14 4 3 16 16 H 1.08998 * 115.55246 * 330.32464 * 15 14 4 17 17 C 1.53003 * 117.49633 * 116.02451 * 15 14 4 18 18 C 1.52999 * 117.49825 * 184.64836 * 15 14 4 19 19 H 1.09005 * 117.49393 * 145.02672 * 18 15 14 20 20 C 1.52994 * 117.49971 * 0.02799 * 18 15 14 21 21 H 1.08996 * 109.47201 * 60.00082 * 1 2 3 22 22 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47109 * 300.00616 * 1 2 3 24 24 H 1.08997 * 109.47661 * 239.99618 * 2 1 3 25 25 H 1.09004 * 109.47176 * 119.99611 * 2 1 3 26 26 H 1.09000 * 109.46718 * 305.07068 * 3 2 1 27 27 H 1.09000 * 109.47531 * 65.06343 * 3 2 1 28 28 H 1.08997 * 109.46880 * 53.95670 * 5 4 3 29 29 H 1.09001 * 109.46594 * 173.95573 * 5 4 3 30 30 H 0.97000 * 119.99969 * 179.97438 * 9 8 6 31 31 H 1.08990 * 109.47128 * 284.56063 * 14 4 3 32 32 H 1.09001 * 109.47301 * 44.55996 * 14 4 3 33 33 H 1.08997 * 117.49955 * 214.98073 * 17 15 14 34 34 H 1.09002 * 117.49667 * 0.02562 * 17 15 14 35 35 H 1.08996 * 109.47176 * 59.99732 * 20 18 15 36 36 H 1.09004 * 109.47133 * 180.02562 * 20 18 15 37 37 H 1.09002 * 109.46857 * 299.99534 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5039 1.4444 -0.1224 5 6 3.9999 2.7779 -0.4881 6 6 3.5238 3.1281 -1.8744 7 1 2.9141 2.4298 -2.4285 8 6 3.8675 4.3396 -2.4357 9 7 3.4525 4.6451 -3.6456 10 14 4.9239 5.5466 -1.4781 11 1 6.3572 5.2876 -1.7674 12 1 4.5801 6.9337 -1.8817 13 1 4.6739 5.3778 -0.0241 14 6 4.1362 0.9686 1.1153 15 6 5.5995 0.6180 0.8382 16 1 5.8180 0.2781 -0.1741 17 6 6.6713 1.4429 1.5536 18 6 6.4059 -0.0021 1.9811 19 1 7.1553 -0.7496 1.7205 20 6 5.6872 -0.2246 3.3133 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6044 1.9819 -0.8411 27 1 1.7527 1.9296 0.9318 28 1 3.6226 3.5133 0.2223 29 1 5.0897 2.7783 -0.4673 30 1 3.6940 5.4976 -4.0404 31 1 4.0872 1.7511 1.8723 32 1 3.6120 0.0828 1.4739 33 1 7.5950 1.6460 1.0119 34 1 6.3338 2.2352 2.2219 35 1 4.8405 -0.8940 3.1619 36 1 6.3787 -0.6687 4.0294 37 1 5.3307 0.7311 3.6977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209420740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:59 Heat of formation + Delta-G solvation = -7.710215 kcal Electronic energy + Delta-G solvation = -14467.952186 eV Core-core repulsion = 12244.730832 eV Total energy + Delta-G solvation = -2223.221355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75509 -37.69267 -34.91736 -33.75574 -30.22768 -29.37017 -27.73274 -25.62329 -22.84473 -22.40437 -21.60854 -20.16919 -18.98695 -17.02481 -16.70172 -16.15175 -15.66187 -15.33896 -14.92415 -14.47445 -14.37050 -13.85489 -13.74254 -13.63263 -13.03622 -12.96341 -12.76790 -12.43465 -12.40575 -12.28679 -12.03909 -11.88936 -11.64988 -11.46558 -11.35916 -10.80792 -10.69312 -10.52806 -9.00409 -8.29178 -6.31438 1.31936 1.32875 1.43893 2.32704 2.85018 3.03998 3.22493 3.85559 3.97081 4.02303 4.13963 4.30907 4.44970 4.48338 4.52739 4.62654 4.73990 4.74713 4.84969 4.91656 4.94978 4.99055 5.02352 5.09007 5.12228 5.21409 5.22814 5.36178 5.42351 5.47748 5.49628 5.55717 6.02952 6.43107 6.69448 6.75285 7.31997 8.87528 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.011312 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.616148 B = 2474.717130 C = 3656.655501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.061 3.939 4 N -0.543 5.543 5 C 0.178 3.822 6 C -0.514 4.514 7 H 0.038 0.962 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.943 3.057 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.255 1.255 14 C 0.091 3.909 15 C -0.156 4.156 16 H 0.091 0.909 17 C -0.190 4.190 18 C -0.132 4.132 19 H 0.115 0.885 20 C -0.120 4.120 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.024 0.976 28 H -0.022 1.022 29 H 0.029 0.971 30 H 0.266 0.734 31 H 0.022 0.978 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -9.002 14.315 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.066 4.066 4 N -0.266 5.266 5 C 0.050 3.950 6 C -0.552 4.552 7 H 0.056 0.944 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.767 3.233 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.179 1.179 14 C -0.037 4.037 15 C -0.174 4.174 16 H 0.109 0.891 17 C -0.227 4.227 18 C -0.150 4.150 19 H 0.133 0.867 20 C -0.177 4.177 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.043 0.957 28 H -0.004 1.004 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.359 -9.187 13.813 16.756 hybrid contribution 0.163 1.549 0.145 1.565 sum 2.523 -7.638 13.958 16.110 Atomic orbital electron populations 1.21700 0.94520 1.02409 1.01621 1.21463 0.96261 0.94978 1.01995 1.22052 0.87649 0.97829 0.99119 1.61852 1.05802 1.26500 1.32495 1.19858 0.95389 0.85941 0.93781 1.21294 1.31928 1.01796 1.00210 0.94388 1.25805 0.97349 0.99936 0.95743 1.70044 1.47966 1.24155 1.16676 0.85768 0.79583 0.78060 0.79887 1.18947 1.20565 1.17876 1.21646 0.93333 0.98955 0.89759 1.22295 0.92275 1.05450 0.97418 0.89059 1.23220 1.00479 0.94863 1.04096 1.22485 1.01480 0.95430 0.95615 0.86695 1.21361 1.00348 1.01747 0.94280 0.93844 0.90837 0.92200 0.92753 0.90997 0.93040 0.95736 1.00425 0.95282 0.92459 0.95987 0.89347 0.88927 0.89388 0.91620 0.90548 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.11 -3.37 5.89 30.59 0.18 -3.19 16 3 C 0.06 2.42 4.81 86.31 0.42 2.83 16 4 N -0.54 -23.12 4.42 -900.80 -3.98 -27.10 16 5 C 0.18 8.85 3.64 85.56 0.31 9.16 16 6 C -0.51 -30.60 8.85 25.60 0.23 -30.38 16 7 H 0.04 2.52 7.49 -2.91 -0.02 2.50 16 8 C 0.01 0.53 5.47 84.66 0.46 0.99 16 9 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 10 Si 0.94 45.32 27.47 68.60 1.88 47.20 16 11 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 14 C 0.09 3.05 4.17 86.30 0.36 3.41 16 15 C -0.16 -4.90 4.97 -10.79 -0.05 -4.96 16 16 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 17 C -0.19 -5.34 9.81 30.60 0.30 -5.04 16 18 C -0.13 -3.10 6.41 -10.79 -0.07 -3.17 16 19 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 20 C -0.12 -2.32 9.20 71.98 0.66 -1.65 16 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.91 6.70 -2.38 -0.02 1.90 16 26 H 0.05 2.40 6.59 -2.39 -0.02 2.39 16 27 H 0.02 0.91 8.06 -2.39 -0.02 0.89 16 28 H -0.02 -1.11 7.18 -2.39 -0.02 -1.12 16 29 H 0.03 1.44 6.66 -2.39 -0.02 1.43 16 30 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.02 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.09 2.57 5.99 -2.39 -0.01 2.56 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.09 2.48 7.94 -2.39 -0.02 2.46 16 35 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 Total: -1.00 -66.28 293.32 2.66 -63.62 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.94 Total: 11.30 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 3.51 Total: -35.01 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -3.68 Total: -87.12 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -66.28 2.66 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.910 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds