Wall clock time and date at job start Sun Mar 29 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 N 1.46902 * 109.46909 * 179.85221 * 3 2 1 5 5 C 1.46901 * 111.00078 * 298.69359 * 4 3 2 6 6 C 1.50694 * 109.47340 * 293.12511 * 5 4 3 7 7 H 1.07997 * 120.00180 * 354.95318 * 6 5 4 8 8 C 1.37877 * 119.99949 * 174.95291 * 6 5 4 9 9 N 1.31514 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47059 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47347 * 119.99923 * 10 8 6 13 13 H 1.48507 * 109.46811 * 239.99719 * 10 8 6 14 14 C 1.46900 * 110.99982 * 62.64824 * 4 3 2 15 15 C 1.53003 * 109.47173 * 66.04460 * 14 4 3 16 16 H 1.09004 * 115.55916 * 29.31408 * 15 14 4 17 17 C 1.53069 * 117.49810 * 243.60446 * 15 14 4 18 18 C 1.52992 * 117.50156 * 174.99869 * 15 14 4 19 19 H 1.09006 * 117.49980 * 359.97438 * 18 15 14 20 20 C 1.53001 * 117.50312 * 214.98154 * 18 15 14 21 21 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46873 * 300.00469 * 1 2 3 23 23 H 1.09007 * 109.46653 * 60.00215 * 1 2 3 24 24 H 1.08997 * 109.46873 * 239.99531 * 2 1 3 25 25 H 1.09007 * 109.46653 * 119.99785 * 2 1 3 26 26 H 1.09000 * 109.46917 * 59.85744 * 3 2 1 27 27 H 1.08997 * 109.46711 * 299.85240 * 3 2 1 28 28 H 1.08999 * 109.46975 * 53.12739 * 5 4 3 29 29 H 1.09000 * 109.46853 * 173.12242 * 5 4 3 30 30 H 0.96999 * 119.99734 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47286 * 306.04748 * 14 4 3 32 32 H 1.08994 * 109.47460 * 186.04457 * 14 4 3 33 33 H 1.08998 * 117.51838 * 145.03226 * 17 15 14 34 34 H 1.09005 * 117.50826 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.46799 * 300.09129 * 20 18 15 36 36 H 1.08996 * 109.47612 * 180.08597 * 20 18 15 37 37 H 1.08998 * 109.47137 * 60.08302 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0036 5 6 4.0326 0.7851 1.2084 6 6 3.6887 1.6111 2.4210 7 1 3.2089 2.5712 2.3020 8 6 3.9868 1.1410 3.6825 9 7 4.5707 -0.0285 3.8274 10 14 3.5600 2.1646 5.1856 11 1 2.9132 3.4302 4.7553 12 1 2.6279 1.4026 6.0551 13 1 4.8000 2.4750 5.9415 14 6 4.0384 0.8113 -1.2127 15 6 3.6774 1.6660 -2.4294 16 1 3.5778 2.7349 -2.2404 17 6 2.7544 1.0448 -3.4806 18 6 4.2411 1.2380 -3.7857 19 1 4.8696 0.3478 -3.8114 20 6 4.6218 2.3430 -4.7731 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6746 1.9571 0.8887 27 1 1.6788 1.9555 -0.8913 28 1 3.5868 -0.2049 1.3049 29 1 5.1155 0.6897 1.1288 30 1 4.7800 -0.3593 4.7149 31 1 3.6043 -0.1822 -1.3249 32 1 5.1225 0.7277 -1.1363 33 1 2.0474 1.7048 -3.9832 34 1 2.4048 0.0272 -3.3055 35 1 3.7421 2.9444 -5.0022 36 1 5.0046 1.8950 -5.6901 37 1 5.3900 2.9770 -4.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209420748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:00 Heat of formation + Delta-G solvation = 8.849657 kcal Electronic energy + Delta-G solvation = -14442.112076 eV Core-core repulsion = 12219.608811 eV Total energy + Delta-G solvation = -2222.503265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.42680 -36.31681 -32.75490 -31.84268 -29.01970 -27.10205 -26.06570 -23.81068 -22.06107 -21.08270 -20.08075 -18.90971 -16.20002 -15.22899 -15.06839 -14.48501 -14.33834 -13.86424 -13.32431 -13.15895 -12.83202 -12.41642 -12.13221 -11.77069 -11.39335 -11.35548 -11.18661 -10.98398 -10.81811 -10.76392 -10.61246 -10.37676 -9.97774 -9.85486 -9.51738 -9.36233 -9.07858 -8.39359 -7.07472 -5.98850 -3.99358 3.32877 3.40339 3.45466 4.00061 4.45493 4.76728 5.07926 5.14001 5.34979 5.36747 5.44959 5.57390 5.61714 5.82272 5.85564 5.86924 5.94749 6.02222 6.08814 6.15694 6.20282 6.29639 6.38605 6.41242 6.50846 6.56061 6.69531 6.84946 7.02543 7.38481 7.49355 7.87259 8.17047 8.28403 8.63223 9.09495 9.64698 11.11927 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034318 B = 0.007601 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.693264 B = 3682.622450 C = 4119.503012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.070 3.930 4 N -0.534 5.534 5 C 0.187 3.813 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.080 3.920 15 C -0.128 4.128 16 H 0.108 0.892 17 C -0.181 4.181 18 C -0.161 4.161 19 H 0.099 0.901 20 C -0.119 4.119 21 H 0.043 0.957 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.003 0.997 29 H 0.023 0.977 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 1.284 -12.444 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.059 4.059 4 N -0.257 5.257 5 C 0.062 3.938 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.048 4.048 15 C -0.146 4.146 16 H 0.126 0.874 17 C -0.218 4.218 18 C -0.180 4.180 19 H 0.117 0.883 20 C -0.176 4.176 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.685 1.669 -12.287 12.936 hybrid contribution -0.444 -0.512 0.903 1.129 sum -4.130 1.156 -11.384 12.165 Atomic orbital electron populations 1.21649 0.96620 1.00551 1.01151 1.22158 0.95416 1.00618 1.01961 1.21990 0.88500 0.94284 1.01082 1.62307 1.06428 1.54769 1.02209 1.19788 0.94964 0.93262 0.85777 1.21195 1.38541 1.04247 0.90016 0.91908 1.24981 0.95513 0.95115 0.99063 1.69970 1.42633 1.18606 1.22817 0.86485 0.78033 0.80365 0.82812 1.19671 1.21176 1.21081 1.21644 0.99481 0.94173 0.89514 1.22480 1.02364 1.00562 0.89202 0.87379 1.23171 0.92493 1.01791 1.04356 1.22356 0.96493 1.00890 0.98272 0.88321 1.21319 1.01214 0.97259 0.97778 0.93754 0.92789 0.93545 0.93141 0.90757 0.90498 0.92909 0.97967 0.95893 0.93085 0.95392 0.91434 0.89427 0.89388 0.92845 0.92700 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.16 -2.99 5.28 -26.73 -0.14 -3.13 16 3 C 0.07 1.38 4.99 -3.82 -0.02 1.36 16 4 N -0.53 -11.63 4.70 -236.07 -1.11 -12.73 16 5 C 0.19 4.89 4.51 -4.98 -0.02 4.87 16 6 C -0.50 -14.14 8.40 -34.44 -0.29 -14.43 16 7 H 0.06 1.77 7.36 -52.49 -0.39 1.39 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.08 1.48 5.04 -3.82 -0.02 1.46 16 15 C -0.13 -1.95 4.48 -90.59 -0.41 -2.36 16 16 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 17 C -0.18 -2.38 9.83 -26.70 -0.26 -2.64 16 18 C -0.16 -2.07 6.12 -90.62 -0.56 -2.63 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.12 -1.29 10.19 37.16 0.38 -0.91 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 25 H 0.07 1.61 6.28 -51.92 -0.33 1.28 16 26 H 0.08 1.66 6.99 -51.93 -0.36 1.29 16 27 H 0.05 0.93 7.20 -51.93 -0.37 0.56 16 28 H 0.00 0.07 6.00 -51.93 -0.31 -0.24 16 29 H 0.02 0.65 7.91 -51.93 -0.41 0.23 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.52 5.82 -51.93 -0.30 0.21 16 32 H 0.07 1.28 7.92 -51.93 -0.41 0.87 16 33 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 35 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -28.99 294.17 -8.58 -37.57 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.55 Total: -1.13 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.07 Total: -18.77 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.37 Total: -38.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.99 -8.58 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.423 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds