Wall clock time and date at job start Sun Mar 29 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 N 1.46902 * 109.46909 * 179.85221 * 3 2 1 5 5 C 1.46901 * 111.00078 * 298.69359 * 4 3 2 6 6 C 1.50694 * 109.47340 * 293.12511 * 5 4 3 7 7 H 1.07997 * 120.00180 * 354.95318 * 6 5 4 8 8 C 1.37877 * 119.99949 * 174.95291 * 6 5 4 9 9 N 1.31514 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47059 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47347 * 119.99923 * 10 8 6 13 13 H 1.48507 * 109.46811 * 239.99719 * 10 8 6 14 14 C 1.46900 * 110.99982 * 62.64824 * 4 3 2 15 15 C 1.53003 * 109.47173 * 66.04460 * 14 4 3 16 16 H 1.09004 * 115.55916 * 29.31408 * 15 14 4 17 17 C 1.53069 * 117.49810 * 243.60446 * 15 14 4 18 18 C 1.52992 * 117.50156 * 174.99869 * 15 14 4 19 19 H 1.09006 * 117.49980 * 359.97438 * 18 15 14 20 20 C 1.53001 * 117.50312 * 214.98154 * 18 15 14 21 21 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46873 * 300.00469 * 1 2 3 23 23 H 1.09007 * 109.46653 * 60.00215 * 1 2 3 24 24 H 1.08997 * 109.46873 * 239.99531 * 2 1 3 25 25 H 1.09007 * 109.46653 * 119.99785 * 2 1 3 26 26 H 1.09000 * 109.46917 * 59.85744 * 3 2 1 27 27 H 1.08997 * 109.46711 * 299.85240 * 3 2 1 28 28 H 1.08999 * 109.46975 * 53.12739 * 5 4 3 29 29 H 1.09000 * 109.46853 * 173.12242 * 5 4 3 30 30 H 0.96999 * 119.99734 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47286 * 306.04748 * 14 4 3 32 32 H 1.08994 * 109.47460 * 186.04457 * 14 4 3 33 33 H 1.08998 * 117.51838 * 145.03226 * 17 15 14 34 34 H 1.09005 * 117.50826 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.46799 * 300.09129 * 20 18 15 36 36 H 1.08996 * 109.47612 * 180.08597 * 20 18 15 37 37 H 1.08998 * 109.47137 * 60.08302 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0036 5 6 4.0326 0.7851 1.2084 6 6 3.6887 1.6111 2.4210 7 1 3.2089 2.5712 2.3020 8 6 3.9868 1.1410 3.6825 9 7 4.5707 -0.0285 3.8274 10 14 3.5600 2.1646 5.1856 11 1 2.9132 3.4302 4.7553 12 1 2.6279 1.4026 6.0551 13 1 4.8000 2.4750 5.9415 14 6 4.0384 0.8113 -1.2127 15 6 3.6774 1.6660 -2.4294 16 1 3.5778 2.7349 -2.2404 17 6 2.7544 1.0448 -3.4806 18 6 4.2411 1.2380 -3.7857 19 1 4.8696 0.3478 -3.8114 20 6 4.6218 2.3430 -4.7731 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6746 1.9571 0.8887 27 1 1.6788 1.9555 -0.8913 28 1 3.5868 -0.2049 1.3049 29 1 5.1155 0.6897 1.1288 30 1 4.7800 -0.3593 4.7149 31 1 3.6043 -0.1822 -1.3249 32 1 5.1225 0.7277 -1.1363 33 1 2.0474 1.7048 -3.9832 34 1 2.4048 0.0272 -3.3055 35 1 3.7421 2.9444 -5.0022 36 1 5.0046 1.8950 -5.6901 37 1 5.3900 2.9770 -4.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209420748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:00 Heat of formation + Delta-G solvation = -8.042972 kcal Electronic energy + Delta-G solvation = -14442.844595 eV Core-core repulsion = 12219.608811 eV Total energy + Delta-G solvation = -2223.235784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83775 -37.73610 -34.81980 -33.43150 -30.36802 -28.79422 -27.50146 -25.63613 -23.69762 -22.36634 -21.30383 -20.43175 -18.36979 -16.89305 -16.70136 -16.10474 -15.74463 -15.38188 -14.80528 -14.48772 -14.20478 -13.86667 -13.50749 -13.22020 -13.00940 -12.78993 -12.69007 -12.56579 -12.36823 -12.24543 -12.20713 -12.10321 -11.74852 -11.36121 -11.29394 -10.72319 -10.59069 -10.50437 -8.86292 -8.18866 -6.28380 1.39902 1.40568 1.54271 2.40544 2.89331 3.13487 3.33871 3.89845 4.04167 4.09640 4.14147 4.20613 4.45551 4.51451 4.54566 4.64978 4.77032 4.86526 4.89050 4.94746 5.00679 5.02255 5.08181 5.12861 5.19340 5.24215 5.32960 5.38635 5.45355 5.51945 5.53091 5.69604 6.10163 6.40756 6.71490 6.89161 7.41191 8.92039 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034318 B = 0.007601 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.693264 B = 3682.622450 C = 4119.503012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C 0.074 3.926 4 N -0.544 5.544 5 C 0.203 3.797 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.085 3.915 15 C -0.147 4.147 16 H 0.101 0.899 17 C -0.166 4.166 18 C -0.149 4.149 19 H 0.099 0.901 20 C -0.117 4.117 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.080 0.920 28 H -0.021 1.021 29 H -0.008 1.008 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 2.157 -13.748 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C -0.054 4.054 4 N -0.266 5.266 5 C 0.077 3.923 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.044 4.044 15 C -0.166 4.166 16 H 0.119 0.881 17 C -0.202 4.202 18 C -0.168 4.168 19 H 0.117 0.883 20 C -0.174 4.174 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.099 0.901 28 H -0.003 1.003 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.972 2.548 -13.614 14.716 hybrid contribution -0.016 -0.813 1.246 1.488 sum -4.988 1.735 -12.368 13.449 Atomic orbital electron populations 1.21603 0.93796 1.01816 1.02108 1.22032 0.97854 0.99135 1.00310 1.21973 0.87024 0.95192 1.01179 1.62213 1.07998 1.54607 1.01827 1.19419 0.92935 0.92330 0.87634 1.21460 1.38585 1.04292 0.91160 0.92247 1.25886 0.95169 0.96261 1.02328 1.70095 1.43540 1.20280 1.23773 0.85373 0.77990 0.78863 0.78643 1.18775 1.20371 1.20437 1.21625 0.98439 0.94788 0.89504 1.22225 1.05926 0.99522 0.88930 0.88115 1.23242 0.92917 1.01866 1.02225 1.22477 0.96596 1.01332 0.96390 0.88262 1.21342 1.01607 0.96663 0.97801 0.92391 0.93324 0.91055 0.92198 0.94945 0.92806 0.90146 1.00312 0.98973 0.92795 0.95450 0.92988 0.87541 0.89296 0.91983 0.90950 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.15 -5.66 5.28 30.60 0.16 -5.49 16 3 C 0.07 2.92 4.99 86.30 0.43 3.35 16 4 N -0.54 -24.26 4.70 -900.80 -4.23 -28.49 16 5 C 0.20 11.13 4.51 85.56 0.39 11.52 16 6 C -0.52 -30.00 8.40 25.60 0.22 -29.78 16 7 H 0.06 3.42 7.36 -2.91 -0.02 3.40 16 8 C 0.00 0.06 5.46 84.65 0.46 0.53 16 9 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 10 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.08 3.16 5.04 86.30 0.43 3.60 16 15 C -0.15 -4.33 4.48 -10.77 -0.05 -4.38 16 16 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 17 C -0.17 -3.86 9.83 30.62 0.30 -3.56 16 18 C -0.15 -3.50 6.12 -10.80 -0.07 -3.57 16 19 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 20 C -0.12 -2.21 10.19 71.98 0.73 -1.48 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.06 2.05 6.34 -2.39 -0.02 2.04 16 25 H 0.03 1.45 6.28 -2.38 -0.01 1.43 16 26 H 0.05 2.35 6.99 -2.39 -0.02 2.33 16 27 H 0.08 2.71 7.20 -2.39 -0.02 2.69 16 28 H -0.02 -1.22 6.00 -2.39 -0.01 -1.23 16 29 H -0.01 -0.47 7.91 -2.39 -0.02 -0.49 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.03 1.02 5.82 -2.39 -0.01 1.01 16 32 H 0.05 2.05 7.92 -2.39 -0.02 2.04 16 33 H 0.11 2.12 8.05 -2.39 -0.02 2.10 16 34 H 0.09 2.09 8.03 -2.38 -0.02 2.07 16 35 H 0.06 1.07 7.90 -2.39 -0.02 1.06 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -63.68 294.17 2.81 -60.87 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.01 Total: 10.01 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 3.72 Total: -32.46 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.95 Total: -85.59 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.68 2.81 -60.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.823 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds