Wall clock time and date at job start Sun Mar 29 2020 21:31:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52996 * 109.47108 * 2 1
4 4 N 1.46899 * 109.47463 * 174.86469 * 3 2 1
5 5 C 1.46893 * 111.00306 * 199.76471 * 4 3 2
6 6 C 1.50708 * 109.47193 * 66.04728 * 5 4 3
7 7 H 1.08002 * 119.99260 * 359.97438 * 6 5 4
8 8 C 1.37867 * 120.00334 * 179.97438 * 6 5 4
9 9 N 1.31522 * 119.99938 * 0.02562 * 8 6 5
10 10 Si 1.86800 * 120.00148 * 179.97438 * 8 6 5
11 11 H 1.48500 * 109.46844 * 90.00175 * 10 8 6
12 12 H 1.48503 * 109.47145 * 209.99764 * 10 8 6
13 13 H 1.48494 * 109.47248 * 330.00367 * 10 8 6
14 14 C 1.46908 * 110.99924 * 75.81114 * 4 3 2
15 15 C 1.52993 * 109.47119 * 199.43744 * 14 4 3
16 16 H 1.09001 * 115.55167 * 29.57821 * 15 14 4
17 17 C 1.53082 * 117.51111 * 243.85965 * 15 14 4
18 18 C 1.53002 * 117.49777 * 175.25338 * 15 14 4
19 19 H 1.09005 * 117.49802 * 214.99716 * 18 15 14
20 20 C 1.52997 * 117.49902 * 359.97438 * 18 15 14
21 21 H 1.09004 * 109.47164 * 60.00435 * 1 2 3
22 22 H 1.08999 * 109.46971 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47255 * 300.00135 * 1 2 3
24 24 H 1.09003 * 109.47293 * 240.00252 * 2 1 3
25 25 H 1.08994 * 109.47162 * 120.00108 * 2 1 3
26 26 H 1.08997 * 109.47296 * 54.86195 * 3 2 1
27 27 H 1.09005 * 109.47198 * 294.86511 * 3 2 1
28 28 H 1.09004 * 109.47325 * 186.04387 * 5 4 3
29 29 H 1.09005 * 109.47536 * 306.04917 * 5 4 3
30 30 H 0.96999 * 120.00099 * 180.02562 * 9 8 6
31 31 H 1.09003 * 109.46458 * 79.43729 * 14 4 3
32 32 H 1.08996 * 109.46704 * 319.43990 * 14 4 3
33 33 H 1.09003 * 117.51214 * 145.04463 * 17 15 14
34 34 H 1.08994 * 117.49357 * 0.02562 * 17 15 14
35 35 H 1.08999 * 109.46941 * 59.91898 * 20 18 15
36 36 H 1.09002 * 109.46897 * 179.91232 * 20 18 15
37 37 H 1.08998 * 109.47219 * 299.91176 * 20 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5037 1.4444 0.1240
5 6 3.9907 2.7489 0.5917
6 6 3.5114 2.9885 2.0003
7 1 2.9052 2.2460 2.4979
8 6 3.8467 4.1553 2.6536
9 7 4.5845 5.0597 2.0473
10 14 3.2519 4.4525 4.3993
11 1 4.2511 3.9199 5.3600
12 1 3.0793 5.9106 4.6219
13 1 1.9525 3.7633 4.6036
14 6 4.1401 1.0694 -1.1459
15 6 5.5761 0.6128 -0.8814
16 1 5.7527 0.1575 0.0931
17 6 6.7068 1.4486 -1.4867
18 6 6.3758 0.0729 -2.0688
19 1 7.0786 -0.7376 -1.8755
20 6 5.6780 0.0304 -3.4297
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.8934 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 1.6035 1.9822 0.8404
27 1 1.7537 1.9291 -0.9324
28 1 5.0806 2.7582 0.5724
29 1 3.6090 3.5345 -0.0604
30 1 4.8207 5.8805 2.5071
31 1 4.1498 1.9296 -1.8153
32 1 3.5794 0.2564 -1.6070
33 1 7.6272 1.5432 -0.9105
34 1 6.4271 2.3239 -2.0729
35 1 5.3795 1.0387 -3.7166
36 1 6.3623 -0.3722 -4.1765
37 1 4.7951 -0.6055 -3.3656
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001209420750.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:02
Heat of formation + Delta-G solvation = 6.020615 kcal
Electronic energy + Delta-G solvation = -14403.680624 eV
Core-core repulsion = 12181.054683 eV
Total energy + Delta-G solvation = -2222.625941 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.22042 -36.12775 -33.02651 -31.97681 -28.44934 -27.50397 -26.20408 -23.94758
-21.33896 -21.06443 -20.09528 -18.78450 -16.36304 -15.60795 -14.87837 -14.46876
-14.24430 -13.63679 -13.35942 -13.03433 -12.68531 -12.36639 -12.05224 -11.87137
-11.66800 -11.40378 -11.14564 -11.01314 -10.79611 -10.68878 -10.58108 -10.25922
-10.00105 -9.80535 -9.47692 -9.24377 -9.02400 -8.38251 -7.16310 -5.97931
-3.98647 3.34384 3.40190 3.43809 4.15919 4.46278 4.87198 5.08819
5.28017 5.35830 5.38632 5.48921 5.53398 5.64345 5.83926 5.95651
6.00548 6.03096 6.10276 6.12743 6.19175 6.26163 6.30915 6.34148
6.41323 6.49876 6.57058 6.75889 6.83950 6.91897 7.43316 7.43717
7.87011 8.19001 8.31121 8.63846 9.09657 9.65103 11.12869
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.022353 B = 0.009566 C = 0.007071
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.336227 B = 2926.231503 C = 3959.063967
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.118 4.118
3 C 0.061 3.939
4 N -0.537 5.537
5 C 0.194 3.806
6 C -0.506 4.506
7 H 0.063 0.937
8 C 0.055 3.945
9 N -0.899 5.899
10 Si 0.896 3.104
11 H -0.281 1.281
12 H -0.288 1.288
13 H -0.274 1.274
14 C 0.088 3.912
15 C -0.124 4.124
16 H 0.109 0.891
17 C -0.175 4.175
18 C -0.166 4.166
19 H 0.097 0.903
20 C -0.118 4.118
21 H 0.047 0.953
22 H 0.047 0.953
23 H 0.054 0.946
24 H 0.049 0.951
25 H 0.067 0.933
26 H 0.085 0.915
27 H 0.015 0.985
28 H 0.035 0.965
29 H -0.014 1.014
30 H 0.260 0.740
31 H 0.024 0.976
32 H 0.062 0.938
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.054 0.946
36 H 0.052 0.948
37 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.367 -8.868 -7.502 11.696
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.156 4.156
3 C -0.067 4.067
4 N -0.261 5.261
5 C 0.069 3.931
6 C -0.544 4.544
7 H 0.081 0.919
8 C -0.146 4.146
9 N -0.538 5.538
10 Si 0.724 3.276
11 H -0.207 1.207
12 H -0.214 1.214
13 H -0.199 1.199
14 C -0.041 4.041
15 C -0.143 4.143
16 H 0.127 0.873
17 C -0.212 4.212
18 C -0.185 4.185
19 H 0.115 0.885
20 C -0.176 4.176
21 H 0.066 0.934
22 H 0.066 0.934
23 H 0.073 0.927
24 H 0.068 0.932
25 H 0.086 0.914
26 H 0.103 0.897
27 H 0.033 0.967
28 H 0.053 0.947
29 H 0.004 0.996
30 H 0.070 0.930
31 H 0.042 0.958
32 H 0.080 0.920
33 H 0.107 0.893
34 H 0.108 0.892
35 H 0.073 0.927
36 H 0.071 0.929
37 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -1.164 -9.021 -7.121 11.552
hybrid contribution -0.342 0.970 0.380 1.096
sum -1.506 -8.051 -6.742 10.608
Atomic orbital electron populations
1.21735 0.96654 1.00718 1.01569 1.21537 0.94367 0.98012 1.01688
1.22023 0.89259 0.95254 1.00188 1.62053 1.04289 1.34237 1.25503
1.19726 0.96177 0.82403 0.94786 1.21201 1.32029 1.02529 0.98675
0.91931 1.24982 0.95437 0.96084 0.98137 1.69969 1.37768 1.08768
1.37328 0.86538 0.79165 0.77089 0.84850 1.20690 1.21387 1.19893
1.21555 0.92750 0.98003 0.91766 1.22363 0.92449 1.02509 0.96953
0.87253 1.23111 1.00375 0.93758 1.03968 1.22368 1.03448 0.97704
0.94937 0.88487 1.21293 0.99726 1.01694 0.94850 0.93355 0.93377
0.92666 0.93181 0.91443 0.89669 0.96660 0.94714 0.99585 0.93045
0.95834 0.91995 0.89287 0.89207 0.92696 0.92852 0.92489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16
2 C -0.12 -1.91 5.98 -26.73 -0.16 -2.07 16
3 C 0.06 1.21 4.79 -3.83 -0.02 1.19 16
4 N -0.54 -11.77 4.36 -236.07 -1.03 -12.80 16
5 C 0.19 5.14 4.55 -4.98 -0.02 5.11 16
6 C -0.51 -14.36 8.23 -34.44 -0.28 -14.64 16
7 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16
8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
9 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16
10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16
11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
14 C 0.09 1.64 4.17 -3.82 -0.02 1.62 16
15 C -0.12 -2.17 5.19 -90.58 -0.47 -2.63 16
16 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16
17 C -0.18 -2.86 9.83 -26.69 -0.26 -3.12 16
18 C -0.17 -2.35 6.40 -90.62 -0.58 -2.93 16
19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
20 C -0.12 -1.46 9.19 37.16 0.34 -1.12 16
21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
24 H 0.05 0.76 6.90 -51.93 -0.36 0.40 16
25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
26 H 0.08 1.87 6.58 -51.93 -0.34 1.53 16
27 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16
28 H 0.03 0.98 7.43 -51.93 -0.39 0.60 16
29 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16
30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
31 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16
32 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16
33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
34 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16
35 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16
36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16
LS Contribution 297.62 15.07 4.49 4.49
Total: -1.00 -29.37 297.62 -8.81 -38.17
By element:
Atomic # 1 Polarization: 5.11 SS G_CDS: -6.78 Total: -1.66 kcal
Atomic # 6 Polarization: -17.59 SS G_CDS: -1.20 Total: -18.79 kcal
Atomic # 7 Polarization: -38.77 SS G_CDS: -0.29 Total: -39.06 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -29.37 -8.81 -38.17 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001209420750.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.194 kcal
(2) G-P(sol) polarization free energy of solvation -29.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.826 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds