Wall clock time and date at job start Sun Mar 29 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 N 1.46898 * 109.47026 * 180.66875 * 3 2 1 5 5 C 1.46894 * 111.00057 * 64.98903 * 4 3 2 6 6 C 1.50708 * 109.47227 * 75.48920 * 5 4 3 7 7 H 1.08000 * 119.99854 * 356.93059 * 6 5 4 8 8 C 1.37875 * 120.00092 * 176.93512 * 6 5 4 9 9 N 1.31518 * 120.00110 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99938 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46665 * 89.99941 * 10 8 6 12 12 H 1.48501 * 109.46867 * 209.99807 * 10 8 6 13 13 H 1.48499 * 109.47086 * 330.00012 * 10 8 6 14 14 C 1.46904 * 110.99897 * 301.03293 * 4 3 2 15 15 C 1.52995 * 109.47420 * 293.95470 * 14 4 3 16 16 H 1.09004 * 115.54884 * 330.58690 * 15 14 4 17 17 C 1.52992 * 117.49856 * 116.25368 * 15 14 4 18 18 C 1.53000 * 117.50110 * 184.91501 * 15 14 4 19 19 H 1.09002 * 117.49663 * 0.02562 * 18 15 14 20 20 C 1.53000 * 117.50001 * 145.01724 * 18 15 14 21 21 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47375 * 60.00179 * 1 2 3 23 23 H 1.08996 * 109.47164 * 299.99786 * 1 2 3 24 24 H 1.09005 * 109.47375 * 119.99925 * 2 1 3 25 25 H 1.08996 * 109.47164 * 240.00214 * 2 1 3 26 26 H 1.08998 * 109.46989 * 300.67353 * 3 2 1 27 27 H 1.08998 * 109.46780 * 60.66802 * 3 2 1 28 28 H 1.08998 * 109.47573 * 195.48581 * 5 4 3 29 29 H 1.08994 * 109.47383 * 315.48613 * 5 4 3 30 30 H 0.97001 * 120.00105 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47281 * 53.95790 * 14 4 3 32 32 H 1.09006 * 109.46559 * 173.95374 * 14 4 3 33 33 H 1.09002 * 117.50161 * 214.98012 * 17 15 14 34 34 H 1.08998 * 117.49796 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46840 * 60.00028 * 20 18 15 36 36 H 1.08995 * 109.46912 * 179.97438 * 20 18 15 37 37 H 1.08992 * 109.47270 * 300.00284 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5088 1.4426 -0.0162 5 6 4.0216 0.8676 -1.2669 6 6 3.8569 1.8663 -2.3835 7 1 3.3707 2.8120 -2.1948 8 6 4.3269 1.5726 -3.6460 9 7 4.9185 0.4207 -3.8759 10 14 4.1222 2.8102 -5.0301 11 1 5.3038 3.7087 -5.0695 12 1 4.0040 2.0908 -6.3239 13 1 2.8960 3.6149 -4.7973 14 6 4.0482 0.7310 1.1504 15 6 3.6982 1.5019 2.4247 16 1 3.5994 2.5812 2.3091 17 6 2.7815 0.8132 3.4377 18 6 4.2716 0.9824 3.7447 19 1 4.8985 0.0916 3.7051 20 6 4.6620 2.0176 4.8014 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6668 1.9598 -0.8839 27 1 1.6864 1.9528 0.8959 28 1 5.0777 0.6251 -1.1493 29 1 3.4651 -0.0388 -1.5051 30 1 5.2495 0.2142 -4.7640 31 1 3.6144 -0.2678 1.1992 32 1 5.1316 0.6525 1.0591 33 1 2.0799 1.4394 3.9888 34 1 2.4281 -0.1893 3.1964 35 1 3.7849 2.6023 5.0787 36 1 5.0520 1.5080 5.6825 37 1 5.4268 2.6799 4.3960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209420751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:03 Heat of formation + Delta-G solvation = 9.502862 kcal Electronic energy + Delta-G solvation = -14412.490316 eV Core-core repulsion = 12190.015377 eV Total energy + Delta-G solvation = -2222.474940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.44862 -36.30672 -32.80241 -31.84310 -29.02025 -27.10175 -26.10200 -23.79681 -22.08559 -21.11846 -20.08186 -18.92117 -16.19227 -15.26955 -15.09219 -14.45857 -14.34953 -13.90308 -13.36091 -13.16254 -12.83233 -12.41350 -12.14799 -11.76025 -11.43319 -11.35338 -11.17637 -11.00699 -10.85248 -10.79413 -10.60459 -10.40801 -9.93549 -9.90218 -9.50115 -9.38638 -9.12425 -8.36491 -7.08988 -5.97142 -3.97575 3.35317 3.40975 3.44923 4.00153 4.46417 4.76607 5.07830 5.13921 5.33022 5.38810 5.45078 5.51899 5.55689 5.81116 5.83966 5.86371 5.92540 6.01576 6.09162 6.13587 6.17520 6.27868 6.34818 6.40074 6.47578 6.51306 6.66865 6.79687 6.95845 7.34199 7.46326 7.88543 8.18948 8.30665 8.62827 9.10081 9.65975 11.13412 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.007660 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.810350 B = 3654.396260 C = 4153.710621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.068 3.932 4 N -0.533 5.533 5 C 0.187 3.813 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.080 3.920 15 C -0.127 4.127 16 H 0.108 0.892 17 C -0.181 4.181 18 C -0.161 4.161 19 H 0.099 0.901 20 C -0.119 4.119 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.027 0.973 29 H -0.001 1.001 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 0.080 12.523 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.061 4.061 4 N -0.255 5.255 5 C 0.062 3.938 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.048 4.048 15 C -0.146 4.146 16 H 0.126 0.874 17 C -0.218 4.218 18 C -0.180 4.180 19 H 0.117 0.883 20 C -0.176 4.176 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.228 0.478 12.388 13.098 hybrid contribution -0.311 -0.356 -0.892 1.009 sum -4.539 0.122 11.496 12.361 Atomic orbital electron populations 1.21648 0.96502 1.00602 1.01260 1.22187 0.95542 1.00671 1.01908 1.22018 0.88689 0.94174 1.01181 1.62306 1.06141 1.54099 1.02999 1.19802 0.95029 0.94062 0.84860 1.21174 1.37092 1.02589 0.93012 0.91997 1.24983 0.95529 0.95480 0.98751 1.69960 1.39940 1.22240 1.22012 0.86520 0.78520 0.81176 0.81324 1.20704 1.21409 1.19895 1.21676 0.99513 0.94128 0.89497 1.22470 1.02353 1.00157 0.89619 0.87378 1.23171 0.92523 1.01805 1.04311 1.22366 0.96352 1.01245 0.98053 0.88311 1.21318 1.01192 0.97788 0.97272 0.93707 0.92789 0.93418 0.92797 0.91154 0.90662 0.92720 0.95516 0.98372 0.93043 0.95358 0.91349 0.89436 0.89400 0.92854 0.92703 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.16 -2.91 5.29 -26.73 -0.14 -3.05 16 3 C 0.07 1.32 5.04 -3.82 -0.02 1.30 16 4 N -0.53 -11.59 4.63 -236.08 -1.09 -12.68 16 5 C 0.19 4.91 4.64 -4.98 -0.02 4.88 16 6 C -0.50 -14.21 8.65 -34.44 -0.30 -14.51 16 7 H 0.06 1.76 7.65 -52.49 -0.40 1.35 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.08 1.48 4.96 -3.82 -0.02 1.46 16 15 C -0.13 -1.95 4.53 -90.63 -0.41 -2.36 16 16 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 17 C -0.18 -2.36 9.83 -26.70 -0.26 -2.62 16 18 C -0.16 -2.08 6.13 -90.58 -0.56 -2.63 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.12 -1.29 10.19 37.16 0.38 -0.92 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.91 6.25 -51.93 -0.32 0.58 16 25 H 0.07 1.45 6.22 -51.93 -0.32 1.12 16 26 H 0.07 1.60 7.40 -51.93 -0.38 1.22 16 27 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 28 H 0.03 0.76 7.74 -51.93 -0.40 0.35 16 29 H 0.00 -0.04 5.88 -51.93 -0.31 -0.34 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.52 5.72 -51.93 -0.30 0.22 16 32 H 0.07 1.31 7.83 -51.93 -0.41 0.91 16 33 H 0.09 1.04 8.05 -51.93 -0.42 0.63 16 34 H 0.09 1.15 7.99 -51.93 -0.42 0.73 16 35 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -29.17 294.66 -8.58 -37.75 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.56 Total: -1.35 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.08 Total: -18.75 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.36 Total: -39.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.17 -8.58 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.252 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds