Wall clock time and date at job start Sun Mar 29 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 N 1.46898 * 109.47026 * 180.66875 * 3 2 1 5 5 C 1.46894 * 111.00057 * 64.98903 * 4 3 2 6 6 C 1.50708 * 109.47227 * 75.48920 * 5 4 3 7 7 H 1.08000 * 119.99854 * 356.93059 * 6 5 4 8 8 C 1.37875 * 120.00092 * 176.93512 * 6 5 4 9 9 N 1.31518 * 120.00110 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99938 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46665 * 89.99941 * 10 8 6 12 12 H 1.48501 * 109.46867 * 209.99807 * 10 8 6 13 13 H 1.48499 * 109.47086 * 330.00012 * 10 8 6 14 14 C 1.46904 * 110.99897 * 301.03293 * 4 3 2 15 15 C 1.52995 * 109.47420 * 293.95470 * 14 4 3 16 16 H 1.09004 * 115.54884 * 330.58690 * 15 14 4 17 17 C 1.52992 * 117.49856 * 116.25368 * 15 14 4 18 18 C 1.53000 * 117.50110 * 184.91501 * 15 14 4 19 19 H 1.09002 * 117.49663 * 0.02562 * 18 15 14 20 20 C 1.53000 * 117.50001 * 145.01724 * 18 15 14 21 21 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47375 * 60.00179 * 1 2 3 23 23 H 1.08996 * 109.47164 * 299.99786 * 1 2 3 24 24 H 1.09005 * 109.47375 * 119.99925 * 2 1 3 25 25 H 1.08996 * 109.47164 * 240.00214 * 2 1 3 26 26 H 1.08998 * 109.46989 * 300.67353 * 3 2 1 27 27 H 1.08998 * 109.46780 * 60.66802 * 3 2 1 28 28 H 1.08998 * 109.47573 * 195.48581 * 5 4 3 29 29 H 1.08994 * 109.47383 * 315.48613 * 5 4 3 30 30 H 0.97001 * 120.00105 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47281 * 53.95790 * 14 4 3 32 32 H 1.09006 * 109.46559 * 173.95374 * 14 4 3 33 33 H 1.09002 * 117.50161 * 214.98012 * 17 15 14 34 34 H 1.08998 * 117.49796 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46840 * 60.00028 * 20 18 15 36 36 H 1.08995 * 109.46912 * 179.97438 * 20 18 15 37 37 H 1.08992 * 109.47270 * 300.00284 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5088 1.4426 -0.0162 5 6 4.0216 0.8676 -1.2669 6 6 3.8569 1.8663 -2.3835 7 1 3.3707 2.8120 -2.1948 8 6 4.3269 1.5726 -3.6460 9 7 4.9185 0.4207 -3.8759 10 14 4.1222 2.8102 -5.0301 11 1 5.3038 3.7087 -5.0695 12 1 4.0040 2.0908 -6.3239 13 1 2.8960 3.6149 -4.7973 14 6 4.0482 0.7310 1.1504 15 6 3.6982 1.5019 2.4247 16 1 3.5994 2.5812 2.3091 17 6 2.7815 0.8132 3.4377 18 6 4.2716 0.9824 3.7447 19 1 4.8985 0.0916 3.7051 20 6 4.6620 2.0176 4.8014 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6668 1.9598 -0.8839 27 1 1.6864 1.9528 0.8959 28 1 5.0777 0.6251 -1.1493 29 1 3.4651 -0.0388 -1.5051 30 1 5.2495 0.2142 -4.7640 31 1 3.6144 -0.2678 1.1992 32 1 5.1316 0.6525 1.0591 33 1 2.0799 1.4394 3.9888 34 1 2.4281 -0.1893 3.1964 35 1 3.7849 2.6023 5.0787 36 1 5.0520 1.5080 5.6825 37 1 5.4268 2.6799 4.3960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209420751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:03 Heat of formation + Delta-G solvation = -7.492060 kcal Electronic energy + Delta-G solvation = -14413.227272 eV Core-core repulsion = 12190.015377 eV Total energy + Delta-G solvation = -2223.211895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85363 -37.71247 -34.85509 -33.42747 -30.36366 -28.81283 -27.50662 -25.61957 -23.69790 -22.40786 -21.29984 -20.42312 -18.37458 -16.87554 -16.76509 -16.10012 -15.71635 -15.40585 -14.81516 -14.49124 -14.18320 -13.87503 -13.51778 -13.14803 -13.04999 -12.79368 -12.70909 -12.57663 -12.36931 -12.25965 -12.19690 -12.12144 -11.72877 -11.36691 -11.34118 -10.73656 -10.56553 -10.50906 -8.86798 -8.17882 -6.27828 1.40358 1.42141 1.53196 2.40926 2.89392 3.12995 3.34093 3.89719 4.03969 4.08483 4.13523 4.18648 4.45005 4.50533 4.54015 4.63753 4.76504 4.86193 4.86896 4.94677 5.00546 5.01828 5.07465 5.13180 5.16626 5.24205 5.30222 5.37541 5.42824 5.51390 5.51972 5.69539 6.11103 6.45368 6.69874 6.88049 7.41281 8.92244 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.007660 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.810350 B = 3654.396260 C = 4153.710621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C 0.072 3.928 4 N -0.543 5.543 5 C 0.203 3.797 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.937 5.937 10 Si 0.968 3.032 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.085 3.915 15 C -0.148 4.148 16 H 0.100 0.900 17 C -0.164 4.164 18 C -0.150 4.150 19 H 0.099 0.901 20 C -0.117 4.117 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.051 0.949 27 H 0.081 0.919 28 H -0.005 1.005 29 H -0.023 1.023 30 H 0.263 0.737 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 0.881 13.886 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C -0.056 4.056 4 N -0.266 5.266 5 C 0.077 3.923 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.578 5.578 10 Si 0.793 3.207 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.189 1.189 14 C -0.043 4.043 15 C -0.166 4.166 16 H 0.118 0.882 17 C -0.201 4.201 18 C -0.169 4.169 19 H 0.117 0.883 20 C -0.174 4.174 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.013 0.987 29 H -0.005 1.005 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.443 1.283 13.775 14.867 hybrid contribution 0.086 -0.640 -1.257 1.413 sum -5.358 0.643 12.518 13.632 Atomic orbital electron populations 1.21604 0.93726 1.01922 1.02123 1.22070 0.97931 0.98966 1.00531 1.22005 0.87067 0.95335 1.01208 1.62214 1.07880 1.54308 1.02204 1.19434 0.92917 0.93074 0.86869 1.21471 1.37224 1.02795 0.94129 0.92318 1.25903 0.94951 0.97454 1.01464 1.70089 1.40700 1.24154 1.22818 0.85400 0.78883 0.78630 0.77807 1.19924 1.20710 1.18891 1.21647 0.98304 0.94570 0.89811 1.22210 1.05997 0.99320 0.89096 0.88201 1.23241 0.92870 1.01714 1.02272 1.22490 0.96554 1.01423 0.96423 0.88268 1.21340 1.01570 0.97371 0.97134 0.92208 0.93352 0.91103 0.91735 0.94899 0.93034 0.90085 0.98716 1.00510 0.92779 0.95228 0.93166 0.87540 0.89201 0.91965 0.90947 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.16 -5.50 5.29 30.59 0.16 -5.33 16 3 C 0.07 2.79 5.04 86.30 0.44 3.22 16 4 N -0.54 -24.26 4.63 -900.81 -4.17 -28.44 16 5 C 0.20 11.17 4.64 85.56 0.40 11.57 16 6 C -0.52 -30.30 8.65 25.60 0.22 -30.08 16 7 H 0.06 3.39 7.65 -2.91 -0.02 3.37 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 10 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 C 0.08 3.18 4.96 86.30 0.43 3.61 16 15 C -0.15 -4.35 4.53 -10.80 -0.05 -4.40 16 16 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 17 C -0.16 -3.80 9.83 30.62 0.30 -3.50 16 18 C -0.15 -3.54 6.13 -10.77 -0.07 -3.61 16 19 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 20 C -0.12 -2.24 10.19 71.98 0.73 -1.50 16 21 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.11 6.25 -2.38 -0.01 2.10 16 25 H 0.03 1.39 6.22 -2.39 -0.01 1.38 16 26 H 0.05 2.22 7.40 -2.39 -0.02 2.21 16 27 H 0.08 2.71 7.32 -2.39 -0.02 2.69 16 28 H -0.01 -0.32 7.74 -2.39 -0.02 -0.34 16 29 H -0.02 -1.32 5.88 -2.39 -0.01 -1.34 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.03 1.09 5.72 -2.39 -0.01 1.08 16 32 H 0.05 2.01 7.83 -2.38 -0.02 2.00 16 33 H 0.11 2.11 8.05 -2.39 -0.02 2.09 16 34 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 35 H 0.06 1.08 7.90 -2.38 -0.02 1.07 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -64.07 294.66 2.88 -61.19 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.01 Total: 9.86 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.74 Total: -32.62 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.89 Total: -85.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -64.07 2.88 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209420751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.696 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds