Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47035 * 2 1 4 4 C 1.34668 * 123.63470 * 95.76749 * 3 2 1 5 5 O 1.36000 * 125.07141 * 0.24373 * 4 3 2 6 6 C 1.34768 * 116.99631 * 114.31048 * 5 4 3 7 7 H 1.08002 * 120.00370 * 4.88048 * 6 5 4 8 8 C 1.38619 * 119.99651 * 184.87197 * 6 5 4 9 9 N 1.31595 * 119.99812 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99846 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47010 * 60.00679 * 10 8 6 12 12 H 1.48501 * 109.46918 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47113 * 300.00154 * 10 8 6 14 14 C 1.41391 * 109.85348 * 179.97438 * 4 3 2 15 15 O 1.21462 * 127.54523 * 179.97438 * 14 4 3 16 16 C 1.51590 * 104.90844 * 0.02562 * 14 4 3 17 17 H 1.08997 * 110.47999 * 118.81819 * 16 14 4 18 18 C 1.53002 * 110.47673 * 241.31105 * 16 14 4 19 19 O 1.34238 * 123.63576 * 275.74722 * 3 2 1 20 20 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46797 * 299.99822 * 1 2 3 22 22 H 1.08998 * 109.47459 * 59.99184 * 1 2 3 23 23 H 1.09000 * 109.46965 * 240.00693 * 2 1 3 24 24 H 1.08990 * 109.47215 * 120.00240 * 2 1 3 25 25 H 0.97007 * 119.99883 * 179.97438 * 9 8 6 26 26 H 1.08992 * 109.47265 * 59.99941 * 18 16 14 27 27 H 1.09001 * 109.46780 * 179.97438 * 18 16 14 28 28 H 1.09000 * 109.47070 * 299.99551 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3872 2.0866 1.1155 5 8 2.3471 1.5769 2.3758 6 6 3.5260 1.4171 3.0089 7 1 4.4387 1.7624 2.5461 8 6 3.5671 0.8098 4.2543 9 7 2.4551 0.3889 4.8180 10 14 5.2011 0.5890 5.1322 11 1 5.8240 1.9176 5.3603 12 1 4.9751 -0.0829 6.4371 13 1 6.1032 -0.2439 4.2969 14 6 2.8136 3.3923 0.7804 15 8 3.2013 4.2610 1.5356 16 6 2.6796 3.4713 -0.7275 17 1 1.9721 4.2518 -1.0072 18 6 4.0425 3.7297 -1.3731 19 8 2.1747 2.1592 -1.1120 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 2.4839 -0.0365 5.6894 26 1 4.7242 2.9178 -1.1200 27 1 3.9274 3.7829 -2.4557 28 1 4.4468 4.6721 -1.0036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379445.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = -81.129624 kcal Electronic energy + Delta-G solvation = -14316.756875 eV Core-core repulsion = 11720.966965 eV Total energy + Delta-G solvation = -2595.789910 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01880 -37.57010 -36.64811 -33.44607 -31.91437 -31.21686 -29.28368 -25.33729 -24.78012 -22.49543 -20.23135 -19.89102 -17.86375 -16.48704 -15.90887 -15.49586 -14.70984 -14.26306 -13.89373 -13.76972 -13.38917 -13.21209 -12.74874 -12.24460 -12.14193 -12.09641 -11.70423 -11.45312 -11.07103 -10.99785 -10.69852 -10.63535 -10.38006 -9.85558 -8.85721 -8.20180 -7.43896 -6.09647 -3.72886 1.51249 3.24643 3.29974 3.31684 3.41531 3.48222 4.23650 4.37770 4.91858 5.12189 5.21605 5.28120 5.47861 5.56191 5.67420 5.77409 5.82966 5.93002 6.09021 6.15131 6.21171 6.47686 6.54786 6.86616 7.36988 7.45706 8.06126 8.29717 9.34424 10.04156 11.09283 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.011525 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.964629 B = 2428.950266 C = 3043.929520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.073 3.927 4 C -0.106 4.106 5 O -0.186 6.186 6 C -0.363 4.363 7 H 0.066 0.934 8 C 0.030 3.970 9 N -0.882 5.882 10 Si 0.932 3.068 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.347 3.653 15 O -0.435 6.435 16 C 0.008 3.992 17 H 0.125 0.875 18 C -0.142 4.142 19 O -0.282 6.282 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.263 0.737 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 0.912 -11.559 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C 0.024 3.976 4 C -0.155 4.155 5 O -0.097 6.097 6 C -0.440 4.440 7 H 0.084 0.916 8 C -0.170 4.170 9 N -0.522 5.522 10 Si 0.758 3.242 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.227 3.773 15 O -0.312 6.312 16 C -0.049 4.049 17 H 0.142 0.858 18 C -0.199 4.199 19 O -0.195 6.195 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.124 0.876 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.187 1.169 -11.124 11.187 hybrid contribution 0.887 0.145 0.472 1.015 sum 0.699 1.314 -10.652 10.755 Atomic orbital electron populations 1.21713 0.94147 1.01982 1.02320 1.20261 0.96356 0.88057 1.04294 1.22308 0.97733 0.92943 0.84645 1.20046 1.11863 0.94051 0.89587 1.84081 1.29630 1.77853 1.18117 1.20948 0.83449 1.38082 1.01504 0.91600 1.25008 0.98479 0.97454 0.96053 1.70026 1.25907 1.39851 1.16448 0.85926 0.81038 0.78539 0.78692 1.20009 1.20573 1.20061 1.22185 0.75711 0.89505 0.89857 1.90568 1.36993 1.45512 1.58166 1.23827 0.98713 0.85387 0.97021 0.85755 1.21769 0.93692 1.03302 1.01118 1.87021 1.79279 1.24390 1.28764 0.91994 0.91659 0.92942 0.90631 0.87642 0.92722 0.91306 0.90849 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 37.16 0.37 -1.80 15 2 C -0.05 -0.90 6.34 -27.88 -0.18 -1.08 15 3 C 0.07 1.44 6.39 -35.57 -0.23 1.22 15 4 C -0.11 -2.56 6.02 -39.65 -0.24 -2.80 15 5 O -0.19 -5.46 9.43 -0.66 -0.01 -5.46 15 6 C -0.36 -10.86 9.71 30.87 0.30 -10.56 15 7 H 0.07 1.92 7.76 -52.49 -0.41 1.52 15 8 C 0.03 0.88 5.49 -17.51 -0.10 0.78 15 9 N -0.88 -27.19 13.67 55.48 0.76 -26.43 15 10 Si 0.93 22.25 29.55 -169.99 -5.02 17.23 15 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 14 C 0.35 7.70 6.98 -32.67 -0.23 7.47 15 15 O -0.43 -10.90 18.04 5.29 0.10 -10.80 15 16 C 0.01 0.12 4.42 -27.44 -0.12 0.00 15 17 H 0.13 1.69 8.14 -51.93 -0.42 1.27 15 18 C -0.14 -1.88 9.67 37.16 0.36 -1.53 15 19 O -0.28 -4.88 10.90 -14.59 -0.16 -5.04 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.11 2.06 7.85 -51.93 -0.41 1.65 15 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -34.04 256.90 -3.86 -37.90 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.33 Total: -2.97 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.06 Total: -8.29 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.76 Total: -26.43 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.04 -3.86 -37.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379445.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.229 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds