Wall clock time and date at job start Sun Mar 29 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 H 1.08996 * 110.15480 * 306.64544 * 3 2 1 5 5 O 1.45491 * 109.99871 * 68.37533 * 3 2 1 6 6 C 1.34566 * 107.73926 * 119.48715 * 5 3 2 7 7 O 1.21510 * 125.04487 * 179.74963 * 6 5 3 8 8 C 1.46986 * 109.91401 * 359.74305 * 6 5 3 9 9 O 1.35803 * 125.33258 * 180.02562 * 8 6 5 10 10 C 1.34784 * 117.00276 * 294.37736 * 9 8 6 11 11 H 1.08000 * 119.99627 * 4.95243 * 10 9 8 12 12 C 1.38683 * 120.00322 * 184.96046 * 10 9 8 13 13 N 1.31542 * 119.99974 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00381 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47108 * 59.99950 * 14 12 10 16 16 H 1.48501 * 109.47226 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46911 * 300.00115 * 14 12 10 18 18 C 1.33674 * 109.33458 * 0.02562 * 8 6 5 19 19 C 1.50702 * 126.55659 * 179.97438 * 18 8 6 20 20 H 1.09005 * 109.47167 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47278 * 299.99863 * 1 2 3 22 22 H 1.09005 * 109.47111 * 60.00018 * 1 2 3 23 23 H 1.09002 * 109.46680 * 240.00535 * 2 1 3 24 24 H 1.08994 * 109.46946 * 120.00704 * 2 1 3 25 25 H 0.96997 * 120.00179 * 179.97438 * 13 12 10 26 26 H 1.08999 * 109.47484 * 354.94113 * 19 18 8 27 27 H 1.08999 * 109.46724 * 234.93626 * 19 18 8 28 28 H 1.09003 * 109.46526 * 114.94210 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5893 2.0001 -0.8210 5 8 1.7308 2.0796 1.2710 6 6 2.8940 2.4458 1.8397 7 8 2.9999 3.0103 2.9105 8 6 4.0176 2.0616 0.9735 9 8 5.3299 2.2815 1.2454 10 6 5.7385 3.5651 1.2917 11 1 5.0188 4.3647 1.1961 12 6 7.0830 3.8592 1.4620 13 7 7.9596 2.8853 1.5788 14 14 7.6495 5.6381 1.5255 15 1 6.9848 6.3290 2.6595 16 1 9.1219 5.6824 1.7127 17 1 7.2919 6.3170 0.2540 18 6 3.5455 1.4618 -0.1239 19 6 4.3592 0.9148 -1.2684 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 8.9001 3.0909 1.6975 26 1 5.4105 1.1594 -1.1164 27 1 4.0146 1.3571 -2.2031 28 1 4.2409 -0.1679 -1.3133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:55 Heat of formation + Delta-G solvation = -94.468359 kcal Electronic energy + Delta-G solvation = -14173.145705 eV Core-core repulsion = 11576.777384 eV Total energy + Delta-G solvation = -2596.368321 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89716 -37.29051 -36.87853 -33.82155 -32.64785 -31.61050 -27.56660 -26.31522 -24.86254 -22.33779 -20.42611 -19.74624 -17.92859 -16.89375 -15.87547 -15.56910 -14.74021 -14.61077 -14.07231 -13.68533 -13.30277 -13.04113 -12.69097 -12.49238 -11.95091 -11.81477 -11.64658 -11.59463 -11.01592 -10.94741 -10.85616 -10.48894 -10.36873 -10.00842 -9.29949 -8.51820 -7.93730 -6.26407 -3.90321 1.58417 3.20173 3.24379 3.26247 3.45203 3.55677 4.15009 4.44436 4.67709 4.88682 5.05550 5.14136 5.38525 5.47309 5.68536 5.77107 5.88143 5.94098 6.04846 6.13395 6.24602 6.27078 6.66115 6.87546 7.21879 7.28118 8.08906 8.14411 9.16636 9.78745 10.91660 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.048058 B = 0.008843 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.490372 B = 3165.594522 C = 3491.110276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.118 3.882 4 H 0.113 0.887 5 O -0.330 6.330 6 C 0.472 3.528 7 O -0.451 6.451 8 C 0.029 3.971 9 O -0.181 6.181 10 C -0.369 4.369 11 H 0.074 0.926 12 C 0.035 3.965 13 N -0.874 5.874 14 Si 0.939 3.061 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.272 1.272 18 C -0.205 4.205 19 C -0.074 4.074 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.267 0.733 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 -4.257 -7.182 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.062 3.938 4 H 0.131 0.869 5 O -0.247 6.247 6 C 0.314 3.686 7 O -0.336 6.336 8 C -0.022 4.022 9 O -0.091 6.091 10 C -0.445 4.445 11 H 0.092 0.908 12 C -0.167 4.167 13 N -0.512 5.512 14 Si 0.764 3.236 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.198 1.198 18 C -0.208 4.208 19 C -0.131 4.131 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.527 -4.120 -6.506 12.250 hybrid contribution 0.229 0.907 0.202 0.957 sum -9.298 -3.213 -6.304 11.684 Atomic orbital electron populations 1.21776 0.95069 1.01688 1.02374 1.21794 0.96604 0.94152 1.03687 1.22159 0.92964 0.94572 0.84059 0.86941 1.87331 1.32061 1.71012 1.34268 1.22343 0.83788 0.76479 0.85994 1.90841 1.85275 1.37104 1.20345 1.21093 0.87837 1.00206 0.93068 1.83935 1.13507 1.27621 1.84001 1.21015 0.92308 0.79632 1.51544 0.90837 1.25113 0.94529 0.99617 0.97412 1.70005 1.02289 1.31368 1.47519 0.85825 0.77850 0.80946 0.79017 1.19687 1.20390 1.19767 1.22849 0.93781 1.08668 0.95465 1.20126 1.00193 0.99262 0.93492 0.92557 0.92029 0.92603 0.89661 0.90914 0.92308 0.89843 0.91742 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.84 37.16 0.37 -1.20 15 2 C -0.12 -1.51 5.66 -26.73 -0.15 -1.66 15 3 C 0.12 1.81 3.64 -27.70 -0.10 1.71 15 4 H 0.11 1.42 8.14 -51.93 -0.42 1.00 15 5 O -0.33 -6.37 10.63 -39.77 -0.42 -6.79 15 6 C 0.47 11.15 8.50 34.27 0.29 11.44 15 7 O -0.45 -12.16 18.04 -19.78 -0.36 -12.52 15 8 C 0.03 0.68 6.22 -37.64 -0.23 0.45 15 9 O -0.18 -5.26 9.51 0.01 0.00 -5.26 15 10 C -0.37 -10.87 9.75 30.90 0.30 -10.57 15 11 H 0.07 2.11 7.76 -52.49 -0.41 1.70 15 12 C 0.03 1.00 5.49 -17.51 -0.10 0.91 15 13 N -0.87 -26.35 13.67 55.48 0.76 -25.59 15 14 Si 0.94 21.76 29.55 -169.99 -5.02 16.74 15 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 18 C -0.20 -3.79 5.77 -100.76 -0.58 -4.37 15 19 C -0.07 -1.16 10.34 36.01 0.37 -0.79 15 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.06 0.71 7.95 -51.93 -0.41 0.30 15 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.08 0.85 8.06 -51.93 -0.42 0.43 15 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 26 H 0.08 1.57 7.84 -51.93 -0.41 1.17 15 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 256.72 15.07 3.87 3.87 Total: -1.00 -33.46 256.72 -4.33 -37.79 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -3.32 Total: -4.15 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.17 Total: -4.09 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.76 Total: -25.59 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.78 Total: -24.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.46 -4.33 -37.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.683 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds