Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46874 * 2 1 4 4 H 1.09005 * 110.53001 * 307.58586 * 3 2 1 5 5 O 1.45744 * 110.36288 * 70.24518 * 3 2 1 6 6 C 1.34240 * 108.26524 * 119.03898 * 5 3 2 7 7 C 1.50696 * 123.64019 * 179.75828 * 6 5 3 8 8 C 1.34665 * 112.72425 * 359.72993 * 6 5 3 9 9 O 1.36003 * 125.07162 * 180.02562 * 8 6 5 10 10 C 1.34770 * 117.00141 * 245.62868 * 9 8 6 11 11 H 1.08000 * 119.99927 * 5.02360 * 10 9 8 12 12 C 1.38617 * 120.00225 * 185.02995 * 10 9 8 13 13 N 1.31594 * 120.00059 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99561 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47059 * 90.00427 * 14 12 10 16 16 H 1.48503 * 109.46604 * 210.00180 * 14 12 10 17 17 H 1.48490 * 109.47422 * 329.99989 * 14 12 10 18 18 C 1.41388 * 109.85686 * 359.97438 * 8 6 5 19 19 O 1.21469 * 127.54873 * 179.97438 * 18 8 6 20 20 H 1.08994 * 109.47378 * 60.00171 * 1 2 3 21 21 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46879 * 300.00111 * 1 2 3 23 23 H 1.08998 * 109.46757 * 239.99799 * 2 1 3 24 24 H 1.09005 * 109.46914 * 119.99820 * 2 1 3 25 25 H 1.08997 * 109.47517 * 274.94214 * 7 6 5 26 26 H 1.09003 * 109.47137 * 34.93363 * 7 6 5 27 27 H 1.08996 * 109.47608 * 154.93256 * 7 6 5 28 28 H 0.97002 * 119.99742 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 2.0104 -0.8089 5 8 1.7736 2.0746 1.2859 6 6 2.9476 2.4301 1.8312 7 6 3.0738 3.1192 3.1654 8 6 4.0005 2.1040 1.0576 9 8 5.3024 2.3468 1.3669 10 6 5.9650 3.2199 0.5827 11 1 5.4398 3.7521 -0.1966 12 6 7.3207 3.4349 0.7763 13 7 7.9678 4.2870 0.0102 14 14 8.2290 2.5147 2.1245 15 1 8.7618 1.2396 1.5812 16 1 9.3524 3.3485 2.6224 17 1 7.2948 2.2248 3.2418 18 6 3.5506 1.4704 -0.1236 19 8 4.2263 1.0470 -1.0399 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.9562 4.1945 3.0316 26 1 2.3005 2.7504 3.8394 27 1 4.0556 2.9111 3.5905 28 1 8.9164 4.4377 0.1460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380267.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -79.965206 kcal Electronic energy + Delta-G solvation = -14222.155490 eV Core-core repulsion = 11626.416073 eV Total energy + Delta-G solvation = -2595.739417 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.15187 -37.66575 -36.88248 -33.84180 -32.16675 -30.96177 -29.33195 -26.25498 -24.55934 -22.26924 -20.34754 -19.93414 -17.81721 -17.05322 -15.80836 -15.47772 -15.20453 -14.25316 -14.11563 -13.56478 -13.35578 -13.23928 -12.81568 -12.40348 -12.17444 -12.14640 -11.98295 -11.96782 -11.54590 -11.04666 -10.88604 -10.62563 -10.32227 -9.62400 -8.95690 -8.34358 -7.58682 -6.11581 -3.79173 1.41505 3.24231 3.37265 3.38204 3.41866 3.52956 4.19986 4.46371 4.74852 4.93206 5.09207 5.22342 5.28643 5.39794 5.50225 5.63583 5.69089 5.83963 5.86551 6.01737 6.05700 6.14725 6.16949 6.63613 7.25694 7.80417 8.04196 8.30580 9.24882 9.85323 10.99835 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.009535 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.938220 B = 2935.887590 C = 3218.831192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.012 3.988 4 H 0.128 0.872 5 O -0.278 6.278 6 C 0.078 3.922 7 C -0.083 4.083 8 C -0.104 4.104 9 O -0.225 6.225 10 C -0.360 4.360 11 H 0.082 0.918 12 C 0.052 3.948 13 N -0.899 5.899 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.262 1.262 18 C 0.348 3.652 19 O -0.428 6.428 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -5.317 4.296 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.146 0.854 5 O -0.191 6.191 6 C 0.028 3.972 7 C -0.140 4.140 8 C -0.152 4.152 9 O -0.137 6.137 10 C -0.437 4.437 11 H 0.100 0.900 12 C -0.147 4.147 13 N -0.542 5.542 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.187 1.187 18 C 0.228 3.772 19 O -0.305 6.305 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.051 -5.525 4.025 14.733 hybrid contribution 0.562 -0.284 0.165 0.651 sum -12.489 -5.809 4.190 14.397 Atomic orbital electron populations 1.21749 0.94438 1.01894 1.02450 1.21585 0.97134 0.92592 1.03990 1.23954 0.98029 0.96436 0.86097 0.85420 1.87034 1.26841 1.72735 1.32441 1.22216 0.84106 0.93323 0.97524 1.20484 1.04062 0.99963 0.89444 1.19759 0.88349 1.09067 0.98067 1.83666 1.15777 1.61381 1.52907 1.20532 0.92733 1.15464 1.14923 0.89998 1.24306 0.95014 0.97214 0.98138 1.69683 1.09809 1.35947 1.38795 0.86193 0.79040 0.79412 0.82222 1.20377 1.21211 1.18677 1.22118 0.90036 0.77857 0.87209 1.90597 1.64190 1.40006 1.35673 0.92486 0.92323 0.91900 0.89482 0.90648 0.89550 0.90966 0.88639 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.86 37.16 0.37 -1.11 15 2 C -0.12 -1.48 5.70 -26.73 -0.15 -1.63 15 3 C 0.01 0.19 3.74 -27.44 -0.10 0.09 15 4 H 0.13 1.77 8.14 -51.93 -0.42 1.35 15 5 O -0.28 -4.52 10.71 -14.59 -0.16 -4.68 15 6 C 0.08 1.43 7.13 -35.58 -0.25 1.18 15 7 C -0.08 -1.24 10.28 36.00 0.37 -0.87 15 8 C -0.10 -2.39 6.02 -39.65 -0.24 -2.63 15 9 O -0.23 -6.16 8.27 -0.68 -0.01 -6.16 15 10 C -0.36 -10.90 10.18 30.87 0.31 -10.58 15 11 H 0.08 2.65 7.99 -52.49 -0.42 2.23 15 12 C 0.05 1.57 5.49 -17.51 -0.10 1.48 15 13 N -0.90 -27.98 13.97 55.48 0.77 -27.21 15 14 Si 0.90 23.02 28.62 -169.99 -4.86 18.16 15 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 15 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 17 H -0.26 -6.48 7.11 56.52 0.40 -6.08 15 18 C 0.35 7.54 6.99 -32.67 -0.23 7.32 15 19 O -0.43 -10.67 18.04 5.29 0.10 -10.58 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.64 8.03 -51.92 -0.42 0.22 15 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 27 H 0.09 1.54 7.87 -51.93 -0.41 1.13 15 28 H 0.27 7.86 8.31 -40.82 -0.34 7.52 15 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -34.02 255.52 -3.67 -37.68 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.34 Total: -4.30 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.02 Total: -6.77 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.77 Total: -27.21 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.86 Total: 18.16 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.02 -3.67 -37.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380267.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.282 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds