Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46874 * 2 1 4 4 H 1.09005 * 110.53001 * 307.58586 * 3 2 1 5 5 O 1.45744 * 110.36288 * 70.24518 * 3 2 1 6 6 C 1.34240 * 108.26524 * 119.03898 * 5 3 2 7 7 C 1.50696 * 123.64019 * 179.75828 * 6 5 3 8 8 C 1.34665 * 112.72425 * 359.72993 * 6 5 3 9 9 O 1.36003 * 125.07162 * 180.02562 * 8 6 5 10 10 C 1.34770 * 117.00141 * 245.62868 * 9 8 6 11 11 H 1.08000 * 119.99927 * 5.02360 * 10 9 8 12 12 C 1.38617 * 120.00225 * 185.02995 * 10 9 8 13 13 N 1.31594 * 120.00059 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99561 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47059 * 90.00427 * 14 12 10 16 16 H 1.48503 * 109.46604 * 210.00180 * 14 12 10 17 17 H 1.48490 * 109.47422 * 329.99989 * 14 12 10 18 18 C 1.41388 * 109.85686 * 359.97438 * 8 6 5 19 19 O 1.21469 * 127.54873 * 179.97438 * 18 8 6 20 20 H 1.08994 * 109.47378 * 60.00171 * 1 2 3 21 21 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46879 * 300.00111 * 1 2 3 23 23 H 1.08998 * 109.46757 * 239.99799 * 2 1 3 24 24 H 1.09005 * 109.46914 * 119.99820 * 2 1 3 25 25 H 1.08997 * 109.47517 * 274.94214 * 7 6 5 26 26 H 1.09003 * 109.47137 * 34.93363 * 7 6 5 27 27 H 1.08996 * 109.47608 * 154.93256 * 7 6 5 28 28 H 0.97002 * 119.99742 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 2.0104 -0.8089 5 8 1.7736 2.0746 1.2859 6 6 2.9476 2.4301 1.8312 7 6 3.0738 3.1192 3.1654 8 6 4.0005 2.1040 1.0576 9 8 5.3024 2.3468 1.3669 10 6 5.9650 3.2199 0.5827 11 1 5.4398 3.7521 -0.1966 12 6 7.3207 3.4349 0.7763 13 7 7.9678 4.2870 0.0102 14 14 8.2290 2.5147 2.1245 15 1 8.7618 1.2396 1.5812 16 1 9.3524 3.3485 2.6224 17 1 7.2948 2.2248 3.2418 18 6 3.5506 1.4704 -0.1236 19 8 4.2263 1.0470 -1.0399 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.9562 4.1945 3.0316 26 1 2.3005 2.7504 3.8394 27 1 4.0556 2.9111 3.5905 28 1 8.9164 4.4377 0.1460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380267.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -104.750401 kcal Electronic energy + Delta-G solvation = -14223.230257 eV Core-core repulsion = 11626.416073 eV Total energy + Delta-G solvation = -2596.814184 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.73060 -39.38979 -38.74455 -35.02006 -34.30949 -32.53193 -30.79863 -27.67531 -26.56009 -23.42862 -21.93455 -21.55027 -19.96916 -18.74163 -17.41784 -17.14086 -16.70593 -16.04408 -15.56092 -15.09783 -14.97353 -14.81471 -14.41357 -14.18550 -13.89972 -13.65953 -13.29801 -13.08414 -12.94202 -12.58064 -12.32078 -12.01809 -11.94031 -11.79503 -10.89156 -10.28611 -9.34164 -8.37242 -6.09549 -0.17833 1.31991 1.38263 1.54154 1.62817 1.86189 2.35909 2.69930 2.97260 3.49676 3.60725 3.73127 3.87602 4.24354 4.35778 4.43611 4.58156 4.67285 4.68392 4.74787 5.03690 5.09794 5.21807 5.37169 5.46925 5.71046 6.04327 6.41779 6.98516 7.75572 8.78640 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.009535 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.938220 B = 2935.887590 C = 3218.831192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.025 3.975 4 H 0.156 0.844 5 O -0.255 6.255 6 C 0.148 3.852 7 C -0.092 4.092 8 C -0.194 4.194 9 O -0.242 6.242 10 C -0.363 4.363 11 H 0.037 0.963 12 C -0.007 4.007 13 N -0.946 5.946 14 Si 0.976 3.024 15 H -0.280 1.280 16 H -0.267 1.267 17 H -0.250 1.250 18 C 0.333 3.667 19 O -0.485 6.485 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 -6.078 6.471 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.032 4.032 4 H 0.174 0.826 5 O -0.166 6.166 6 C 0.097 3.903 7 C -0.147 4.147 8 C -0.241 4.241 9 O -0.155 6.155 10 C -0.440 4.440 11 H 0.055 0.945 12 C -0.202 4.202 13 N -0.591 5.591 14 Si 0.799 3.201 15 H -0.206 1.206 16 H -0.192 1.192 17 H -0.174 1.174 18 C 0.217 3.783 19 O -0.367 6.367 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.138 0.862 27 H 0.104 0.896 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.585 -6.287 6.218 17.919 hybrid contribution 1.009 0.012 -0.466 1.111 sum -14.576 -6.276 5.752 16.880 Atomic orbital electron populations 1.21734 0.91519 1.03483 1.03132 1.21656 0.99386 0.89765 1.04104 1.24157 0.93783 0.99087 0.86141 0.82646 1.87087 1.25583 1.71313 1.32571 1.22852 0.83290 0.87500 0.96669 1.20808 1.05306 1.00796 0.87812 1.20326 0.88035 1.14318 1.01407 1.83599 1.17940 1.61390 1.52526 1.20355 0.93131 1.16735 1.13799 0.94530 1.25240 0.95775 0.98195 1.00953 1.69798 1.10482 1.37740 1.41108 0.85131 0.78039 0.77815 0.79149 1.20574 1.19198 1.17380 1.22663 0.92901 0.76380 0.86315 1.90554 1.66033 1.42668 1.37457 0.91347 0.90404 0.91648 0.89336 0.90847 0.87530 0.86205 0.89633 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.86 71.98 0.71 -1.52 15 2 C -0.11 -2.56 5.70 30.59 0.17 -2.39 15 3 C 0.02 0.73 3.74 30.13 0.11 0.84 15 4 H 0.16 3.87 8.14 -2.38 -0.02 3.85 15 5 O -0.26 -7.34 10.71 -75.12 -0.80 -8.14 15 6 C 0.15 5.10 7.13 24.86 0.18 5.27 15 7 C -0.09 -2.37 10.28 71.23 0.73 -1.64 15 8 C -0.19 -9.00 6.02 22.23 0.13 -8.87 15 9 O -0.24 -13.58 8.27 -24.86 -0.21 -13.79 15 10 C -0.36 -23.06 10.18 67.91 0.69 -22.37 15 11 H 0.04 2.56 7.99 -2.91 -0.02 2.53 15 12 C -0.01 -0.46 5.49 84.82 0.47 0.00 15 13 N -0.95 -61.13 13.97 21.61 0.30 -60.82 15 14 Si 0.98 48.34 28.62 68.60 1.96 50.30 15 15 H -0.28 -13.82 7.11 99.48 0.71 -13.11 15 16 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 17 H -0.25 -11.72 7.11 99.48 0.71 -11.01 15 18 C 0.33 14.75 6.99 26.75 0.19 14.94 15 19 O -0.49 -25.59 18.04 -3.52 -0.06 -25.66 15 20 H 0.07 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.06 1.02 8.03 -2.38 -0.02 1.00 15 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.07 1.73 8.14 -2.38 -0.02 1.71 15 25 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.08 2.52 7.87 -2.39 -0.02 2.50 15 28 H 0.28 16.51 8.31 -92.71 -0.77 15.74 15 Total: -1.00 -79.36 255.52 5.73 -73.63 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 1.15 Total: 0.20 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.38 Total: -15.73 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.30 Total: -60.82 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.07 Total: -47.58 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.96 Total: 50.30 kcal Total: -79.36 5.73 -73.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380267.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.122 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds