Wall clock time and date at job start Sun Mar 29 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.76206 * 126.03880 * 2 1 4 4 C 1.70974 * 90.28197 * 180.17116 * 3 2 1 5 5 N 1.29034 * 110.16724 * 359.83787 * 4 3 2 6 6 C 1.31777 * 117.12344 * 0.02562 * 5 4 3 7 7 C 1.50705 * 122.74791 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46992 * 90.02177 * 7 6 5 9 9 C 1.46498 * 120.00267 * 270.00192 * 8 7 6 10 10 C 1.36935 * 119.99806 * 90.00185 * 8 7 6 11 11 H 1.08002 * 120.00152 * 339.95358 * 10 8 7 12 12 C 1.38816 * 119.99792 * 160.23127 * 10 8 7 13 13 N 1.31613 * 120.00078 * 344.38594 * 12 10 8 14 14 Si 1.86805 * 119.99883 * 164.38970 * 12 10 8 15 15 H 1.48494 * 109.47345 * 94.67709 * 14 12 10 16 16 H 1.48496 * 109.47124 * 214.67931 * 14 12 10 17 17 H 1.48502 * 109.46887 * 334.67483 * 14 12 10 18 18 H 1.09001 * 109.47286 * 270.12622 * 1 2 3 19 19 H 1.09001 * 109.47176 * 30.12265 * 1 2 3 20 20 H 1.08996 * 109.47147 * 150.12187 * 1 2 3 21 21 H 1.08001 * 124.91907 * 179.83925 * 4 3 2 22 22 H 1.09003 * 109.46990 * 330.02430 * 7 6 5 23 23 H 1.08994 * 109.46930 * 210.02456 * 7 6 5 24 24 H 1.09002 * 109.47142 * 264.89429 * 9 8 7 25 25 H 1.08998 * 109.47391 * 24.88953 * 9 8 7 26 26 H 1.08998 * 109.47393 * 144.89847 * 9 8 7 27 27 H 0.96999 * 119.99972 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4258 -0.0051 5 7 3.5843 -0.8171 -0.0030 6 6 2.2932 -1.0806 0.0018 7 6 1.7479 -2.4855 0.0042 8 7 1.5758 -2.9402 1.3862 9 6 2.6725 -3.6267 2.0734 10 6 0.3899 -2.7237 2.0356 11 1 -0.2883 -1.9613 1.6816 12 6 0.0619 -3.4801 3.1523 13 7 0.7178 -4.5917 3.4101 14 14 -1.3106 -2.9204 4.2893 15 1 -2.5797 -3.5843 3.8975 16 1 -0.9732 -3.2843 5.6889 17 1 -1.4697 -1.4476 4.1855 18 1 -0.3634 0.0023 1.0277 19 1 -0.3633 0.8889 -0.5157 20 1 -0.3633 -0.8910 -0.5119 21 1 4.9502 0.7831 -0.0094 22 1 2.4444 -3.1465 -0.5117 23 1 0.7851 -2.5024 -0.5064 24 1 2.5423 -4.7047 1.9790 25 1 3.6219 -3.3348 1.6244 26 1 2.6694 -3.3513 3.1280 27 1 0.4884 -5.1204 4.1902 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232206996.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:47 Heat of formation + Delta-G solvation = 66.366602 kcal Electronic energy + Delta-G solvation = -12199.253680 eV Core-core repulsion = 10084.905308 eV Total energy + Delta-G solvation = -2114.348372 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.32755 -35.36820 -32.40264 -31.02938 -27.87426 -25.89316 -24.90213 -23.66307 -21.28198 -18.26365 -17.65499 -16.46463 -15.14730 -15.01889 -14.13053 -13.53869 -13.17700 -12.96778 -12.73006 -12.39722 -12.24640 -11.70002 -11.24003 -10.84226 -10.68761 -10.55895 -10.26201 -9.97818 -9.81009 -9.15889 -8.76232 -8.56023 -8.16311 -6.79048 -5.71856 -3.14774 1.23343 1.84304 2.19216 3.36160 3.40290 3.45109 3.46900 4.52192 4.75447 5.41069 5.51366 5.57790 5.67771 5.77352 5.97835 6.15842 6.38599 6.56307 6.64521 6.82228 6.92804 7.46274 7.75545 7.83784 8.30776 8.38611 9.23357 9.87099 10.36007 11.33192 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.010514 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.072015 B = 2662.549665 C = 3059.775157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.197 4.197 3 S 0.053 5.947 4 C 0.008 3.992 5 N -0.453 5.453 6 C 0.053 3.947 7 C 0.217 3.783 8 N -0.587 5.587 9 C 0.163 3.837 10 C -0.257 4.257 11 H 0.073 0.927 12 C 0.002 3.998 13 N -0.904 5.904 14 Si 0.900 3.100 15 H -0.287 1.287 16 H -0.290 1.290 17 H -0.280 1.280 18 H 0.081 0.919 19 H 0.058 0.942 20 H 0.082 0.918 21 H 0.189 0.811 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.004 0.996 26 H 0.039 0.961 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 9.838 -6.823 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.318 4.318 3 S 0.304 5.696 4 C -0.291 4.291 5 N -0.167 5.167 6 C -0.081 4.081 7 C 0.086 3.914 8 N -0.308 5.308 9 C 0.018 3.982 10 C -0.386 4.386 11 H 0.091 0.909 12 C -0.197 4.197 13 N -0.549 5.549 14 Si 0.730 3.270 15 H -0.214 1.214 16 H -0.216 1.216 17 H -0.205 1.205 18 H 0.099 0.901 19 H 0.077 0.923 20 H 0.100 0.900 21 H 0.206 0.794 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.542 10.333 -6.644 12.545 hybrid contribution -0.785 -0.390 0.919 1.270 sum 1.757 9.943 -5.725 11.608 Atomic orbital electron populations 1.20269 0.87142 1.02244 1.03299 1.25683 1.01243 0.93229 1.11664 1.83640 1.01313 1.13933 1.70705 1.28119 1.02895 0.91438 1.06638 1.66198 1.18267 1.18543 1.13675 1.21897 0.86406 1.00155 0.99608 1.19342 0.97896 0.86044 0.88108 1.43915 1.12372 1.65966 1.08515 1.20810 0.85917 0.95888 0.95565 1.19299 0.96199 1.14036 1.09104 0.90886 1.24942 0.98689 0.95723 1.00314 1.70111 1.43116 1.13335 1.28328 0.86315 0.81748 0.78266 0.80686 1.21420 1.21591 1.20542 0.90097 0.92320 0.89977 0.79384 0.92756 0.91546 0.95072 0.97695 0.94189 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 9.21 36.00 0.33 -0.79 15 2 C -0.20 -3.54 6.59 -35.92 -0.24 -3.77 15 3 S 0.05 0.79 23.22 -107.50 -2.50 -1.71 15 4 C 0.01 0.12 12.23 51.59 0.63 0.75 15 5 N -0.45 -8.87 10.53 -11.90 -0.13 -8.99 15 6 C 0.05 1.07 6.32 -84.23 -0.53 0.54 15 7 C 0.22 4.72 5.82 -5.19 -0.03 4.69 15 8 N -0.59 -15.14 2.91 -182.50 -0.53 -15.67 15 9 C 0.16 4.25 8.98 59.85 0.54 4.78 15 10 C -0.26 -6.99 9.67 -15.06 -0.15 -7.13 15 11 H 0.07 1.87 5.98 -52.49 -0.31 1.56 15 12 C 0.00 0.05 5.05 -17.43 -0.09 -0.04 15 13 N -0.90 -26.64 10.67 55.49 0.59 -26.05 15 14 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 15 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 16 H -0.29 -7.13 7.11 56.52 0.40 -6.72 15 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 18 H 0.08 1.40 7.26 -51.93 -0.38 1.02 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.08 1.29 6.76 -51.93 -0.35 0.94 15 21 H 0.19 2.22 8.06 -52.49 -0.42 1.79 15 22 H 0.05 1.15 8.07 -51.93 -0.42 0.73 15 23 H 0.07 1.35 6.61 -51.93 -0.34 1.01 15 24 H 0.03 0.86 7.41 -51.93 -0.38 0.47 15 25 H 0.00 0.11 8.03 -51.93 -0.42 -0.31 15 26 H 0.04 1.12 7.19 -51.93 -0.37 0.74 15 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 243.93 15.07 3.68 3.68 Total: -1.00 -30.82 243.93 -6.41 -37.22 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -2.96 Total: -4.29 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.47 Total: -0.98 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.06 Total: -50.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.82 -6.41 -37.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232206996.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.589 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds