Wall clock time and date at job start Sun Mar 29 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.76206 * 126.03880 * 2 1 4 4 C 1.70974 * 90.28197 * 180.17116 * 3 2 1 5 5 N 1.29034 * 110.16724 * 359.83787 * 4 3 2 6 6 C 1.31777 * 117.12344 * 0.02562 * 5 4 3 7 7 C 1.50705 * 122.74791 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46992 * 90.02177 * 7 6 5 9 9 C 1.46498 * 120.00267 * 270.00192 * 8 7 6 10 10 C 1.36935 * 119.99806 * 90.00185 * 8 7 6 11 11 H 1.08002 * 120.00152 * 339.95358 * 10 8 7 12 12 C 1.38816 * 119.99792 * 160.23127 * 10 8 7 13 13 N 1.31613 * 120.00078 * 344.38594 * 12 10 8 14 14 Si 1.86805 * 119.99883 * 164.38970 * 12 10 8 15 15 H 1.48494 * 109.47345 * 94.67709 * 14 12 10 16 16 H 1.48496 * 109.47124 * 214.67931 * 14 12 10 17 17 H 1.48502 * 109.46887 * 334.67483 * 14 12 10 18 18 H 1.09001 * 109.47286 * 270.12622 * 1 2 3 19 19 H 1.09001 * 109.47176 * 30.12265 * 1 2 3 20 20 H 1.08996 * 109.47147 * 150.12187 * 1 2 3 21 21 H 1.08001 * 124.91907 * 179.83925 * 4 3 2 22 22 H 1.09003 * 109.46990 * 330.02430 * 7 6 5 23 23 H 1.08994 * 109.46930 * 210.02456 * 7 6 5 24 24 H 1.09002 * 109.47142 * 264.89429 * 9 8 7 25 25 H 1.08998 * 109.47391 * 24.88953 * 9 8 7 26 26 H 1.08998 * 109.47393 * 144.89847 * 9 8 7 27 27 H 0.96999 * 119.99972 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4258 -0.0051 5 7 3.5843 -0.8171 -0.0030 6 6 2.2932 -1.0806 0.0018 7 6 1.7479 -2.4855 0.0042 8 7 1.5758 -2.9402 1.3862 9 6 2.6725 -3.6267 2.0734 10 6 0.3899 -2.7237 2.0356 11 1 -0.2883 -1.9613 1.6816 12 6 0.0619 -3.4801 3.1523 13 7 0.7178 -4.5917 3.4101 14 14 -1.3106 -2.9204 4.2893 15 1 -2.5797 -3.5843 3.8975 16 1 -0.9732 -3.2843 5.6889 17 1 -1.4697 -1.4476 4.1855 18 1 -0.3634 0.0023 1.0277 19 1 -0.3633 0.8889 -0.5157 20 1 -0.3633 -0.8910 -0.5119 21 1 4.9502 0.7831 -0.0094 22 1 2.4444 -3.1465 -0.5117 23 1 0.7851 -2.5024 -0.5064 24 1 2.5423 -4.7047 1.9790 25 1 3.6219 -3.3348 1.6244 26 1 2.6694 -3.3513 3.1280 27 1 0.4884 -5.1204 4.1902 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232206996.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:47 Heat of formation + Delta-G solvation = 46.474247 kcal Electronic energy + Delta-G solvation = -12200.116277 eV Core-core repulsion = 10084.905308 eV Total energy + Delta-G solvation = -2115.210969 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73388 -37.28574 -33.95051 -32.87121 -29.48208 -27.96007 -26.51666 -24.99345 -23.21307 -19.76710 -19.07899 -18.33779 -17.01639 -16.40106 -15.80295 -15.33089 -14.87511 -14.74229 -14.03703 -13.74688 -13.59778 -13.50206 -13.09521 -12.76203 -12.61004 -12.26428 -11.97036 -11.90354 -11.79060 -10.64888 -10.46537 -10.01778 -9.55520 -8.84226 -7.81472 -5.27250 -0.06430 0.58789 0.89517 1.46020 1.48093 1.56905 1.97437 2.54251 3.31707 3.52278 3.84110 4.18227 4.26713 4.42656 4.64574 4.70806 4.83840 4.92797 5.10465 5.15880 5.32249 5.39160 5.61613 5.71295 6.30395 6.97653 7.14070 7.84286 8.31187 9.23407 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.010514 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.072015 B = 2662.549665 C = 3059.775157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.217 4.217 3 S 0.131 5.869 4 C 0.007 3.993 5 N -0.495 5.495 6 C 0.028 3.972 7 C 0.218 3.782 8 N -0.604 5.604 9 C 0.184 3.816 10 C -0.256 4.256 11 H 0.087 0.913 12 C -0.059 4.059 13 N -0.942 5.942 14 Si 0.964 3.036 15 H -0.282 1.282 16 H -0.298 1.298 17 H -0.267 1.267 18 H 0.066 0.934 19 H 0.090 0.910 20 H 0.078 0.922 21 H 0.227 0.773 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.008 0.992 25 H 0.019 0.981 26 H 0.012 0.988 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 12.415 -7.485 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.339 4.339 3 S 0.383 5.617 4 C -0.291 4.291 5 N -0.209 5.209 6 C -0.105 4.105 7 C 0.089 3.911 8 N -0.326 5.326 9 C 0.039 3.961 10 C -0.386 4.386 11 H 0.105 0.895 12 C -0.253 4.253 13 N -0.589 5.589 14 Si 0.793 3.207 15 H -0.209 1.209 16 H -0.225 1.225 17 H -0.192 1.192 18 H 0.085 0.915 19 H 0.109 0.891 20 H 0.096 0.904 21 H 0.243 0.757 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.026 0.974 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.260 12.958 -7.351 15.068 hybrid contribution -0.618 -1.044 1.000 1.572 sum 1.641 11.914 -6.351 13.601 Atomic orbital electron populations 1.20293 0.86090 1.03734 1.02736 1.25984 1.02524 0.94719 1.10656 1.83350 0.98806 1.10704 1.68829 1.28789 1.05208 0.90738 1.04323 1.66152 1.18177 1.20715 1.15893 1.21424 0.87370 0.99510 1.02203 1.19349 0.98435 0.87322 0.85983 1.44103 1.11877 1.66570 1.10071 1.20450 0.86982 0.94533 0.94161 1.19732 0.96536 1.13476 1.08859 0.89529 1.25756 1.01439 0.96001 1.02104 1.70277 1.45218 1.14687 1.28722 0.85296 0.79060 0.78360 0.78032 1.20895 1.22491 1.19175 0.91499 0.89132 0.90356 0.75724 0.93101 0.90742 0.97418 0.96242 0.96931 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 9.21 71.23 0.66 -1.39 15 2 C -0.22 -7.29 6.59 24.64 0.16 -7.12 15 3 S 0.13 3.39 23.22 -56.49 -1.31 2.08 15 4 C 0.01 0.20 12.23 130.65 1.60 1.80 15 5 N -0.50 -18.56 10.53 -191.55 -2.02 -20.58 15 6 C 0.03 1.09 6.32 41.52 0.26 1.36 15 7 C 0.22 9.47 5.82 85.63 0.50 9.96 15 8 N -0.60 -31.47 2.91 -731.31 -2.13 -33.60 15 9 C 0.18 9.86 8.98 127.77 1.15 11.01 15 10 C -0.26 -13.94 9.67 84.03 0.81 -13.12 15 11 H 0.09 4.37 5.98 -2.91 -0.02 4.35 15 12 C -0.06 -3.31 5.05 84.86 0.43 -2.89 15 13 N -0.94 -56.97 10.67 21.65 0.23 -56.74 15 14 Si 0.96 45.06 29.58 68.60 2.03 47.09 15 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 16 H -0.30 -14.22 7.11 99.48 0.71 -13.51 15 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 18 H 0.07 2.17 7.26 -2.39 -0.02 2.15 15 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.08 2.33 6.76 -2.39 -0.02 2.31 15 21 H 0.23 4.36 8.06 -2.91 -0.02 4.34 15 22 H 0.05 2.18 8.07 -2.39 -0.02 2.16 15 23 H 0.07 3.02 6.61 -2.39 -0.02 3.00 15 24 H 0.01 0.43 7.41 -2.39 -0.02 0.42 15 25 H 0.02 0.95 8.03 -2.39 -0.02 0.93 15 26 H 0.01 0.70 7.19 -2.39 -0.02 0.68 15 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -66.32 243.93 3.54 -62.78 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.17 Total: -0.64 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.57 Total: -0.39 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -3.91 Total: -110.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -66.32 3.54 -62.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232206996.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.255 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds