Wall clock time and date at job start Sun Mar 29 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99682 * 2 1 4 4 C 1.50701 * 109.46836 * 66.04833 * 3 2 1 5 5 H 1.08000 * 120.00348 * 359.97438 * 4 3 2 6 6 C 1.37886 * 120.00069 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00193 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99791 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47281 * 89.99500 * 8 6 4 10 10 H 1.48494 * 109.46726 * 209.99931 * 8 6 4 11 11 H 1.48505 * 109.46935 * 329.99549 * 8 6 4 12 12 C 1.46897 * 111.00024 * 236.05043 * 2 1 3 13 13 C 1.50697 * 109.47154 * 293.94809 * 12 2 1 14 14 C 1.37813 * 122.62487 * 270.18700 * 13 12 2 15 15 N 1.30077 * 116.88060 * 180.27105 * 14 13 12 16 16 S 1.69605 * 107.15390 * 359.76469 * 15 14 13 17 17 C 1.35140 * 122.61549 * 90.00049 * 13 12 2 18 18 H 1.09005 * 109.46648 * 183.95047 * 1 2 3 19 19 H 1.08999 * 109.47501 * 303.94931 * 1 2 3 20 20 H 1.09000 * 109.47303 * 63.95557 * 1 2 3 21 21 H 1.08997 * 109.47304 * 186.04238 * 3 2 1 22 22 H 1.09000 * 109.47462 * 306.04705 * 3 2 1 23 23 H 0.96999 * 120.00080 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.47052 * 173.95105 * 12 2 1 25 25 H 1.09002 * 109.47544 * 53.95504 * 12 2 1 26 26 H 1.08002 * 121.55413 * 0.04155 * 14 13 12 27 27 H 1.08002 * 127.25308 * 0.04584 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0275 3.3492 1.5291 7 7 1.7142 3.9389 2.6620 8 14 3.0006 4.2760 0.2315 9 1 2.0640 4.9804 -0.6804 10 1 3.8877 5.2668 0.8920 11 1 3.8238 3.3172 -0.5486 12 6 1.9954 -0.7659 -1.1376 13 6 1.6371 -2.2203 -0.9729 14 6 2.4489 -3.1151 -0.3100 15 7 2.0328 -4.3455 -0.2386 16 16 0.5366 -4.4145 -1.0342 17 6 0.4926 -2.7483 -1.4606 18 1 -0.3633 -1.0253 0.0708 19 1 -0.3634 0.5739 0.8525 20 1 -0.3634 0.4512 -0.9233 21 1 3.0796 1.3445 -0.1082 22 1 1.5610 1.9274 -0.8309 23 1 1.9887 4.8551 2.8240 24 1 3.0797 -0.6609 -1.1757 25 1 1.5612 -0.3871 -2.0629 26 1 3.3885 -2.8098 0.1264 27 1 -0.2838 -2.2337 -2.0072 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232224683.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:58 Heat of formation + Delta-G solvation = 26.583901 kcal Electronic energy + Delta-G solvation = -11777.275855 eV Core-core repulsion = 9661.202376 eV Total energy + Delta-G solvation = -2116.073479 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.26475 -37.84642 -34.67805 -32.63904 -29.79823 -28.69680 -25.92838 -24.52900 -22.09995 -20.61959 -19.00613 -18.60015 -16.80410 -16.38462 -16.19759 -15.86567 -14.85623 -14.68134 -14.39871 -14.23814 -13.58845 -13.42030 -13.03596 -12.69268 -12.56713 -12.21974 -11.87302 -11.77074 -11.52383 -11.30323 -10.77080 -10.60454 -9.54568 -8.99741 -8.25535 -6.29283 -0.21390 0.63298 0.94270 1.37982 1.40131 1.50074 1.51518 2.37372 3.08095 3.42751 3.83399 3.95975 4.28466 4.45536 4.55356 4.64602 4.72412 4.86109 4.98299 5.00362 5.06911 5.22267 5.55783 5.69033 5.99273 6.35668 6.66504 6.77661 7.34415 8.91259 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.066689 B = 0.006729 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.757298 B = 4160.370884 C = 4231.344485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.546 5.546 3 C 0.171 3.829 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.243 1.243 12 C 0.117 3.883 13 C -0.161 4.161 14 C 0.107 3.893 15 N -0.497 5.497 16 S 0.256 5.744 17 C -0.188 4.188 18 H 0.071 0.929 19 H 0.044 0.956 20 H 0.027 0.973 21 H 0.036 0.964 22 H -0.008 1.008 23 H 0.266 0.734 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.193 0.807 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -12.255 -12.410 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.270 5.270 3 C 0.044 3.956 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.592 5.592 8 Si 0.773 3.227 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.166 1.166 12 C -0.013 4.013 13 C -0.179 4.179 14 C -0.091 4.091 15 N -0.317 5.317 16 S 0.408 5.592 17 C -0.337 4.337 18 H 0.089 0.911 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.010 0.990 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.210 0.790 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.207 -14.522 -11.586 18.616 hybrid contribution 0.453 2.992 -0.682 3.103 sum -0.754 -11.529 -12.268 16.852 Atomic orbital electron populations 1.22202 0.87683 1.00928 0.99955 1.61818 1.08328 1.14753 1.42122 1.19973 0.95645 0.85399 0.94556 1.21288 1.34744 0.97485 1.01983 0.94736 1.25889 0.97040 0.98475 0.97758 1.70061 1.48709 1.13863 1.26566 0.85682 0.79186 0.78745 0.79109 1.19367 1.21084 1.16587 1.20690 1.01050 0.87419 0.92119 1.20143 0.95841 0.98416 1.03475 1.22975 1.02125 0.87858 0.96119 1.76746 1.09108 1.22557 1.23260 1.83778 1.20029 1.06609 1.48803 1.26772 1.01579 1.00867 1.04504 0.91072 0.93743 0.95453 0.94557 0.99041 0.92509 0.89210 0.92883 0.79041 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.03 127.69 1.15 2.62 15 2 N -0.55 -21.16 4.74 -931.65 -4.42 -25.58 15 3 C 0.17 7.78 3.79 85.56 0.32 8.10 15 4 C -0.52 -29.33 9.01 25.60 0.23 -29.10 15 5 H 0.03 2.21 7.37 -2.91 -0.02 2.19 15 6 C 0.01 0.31 5.47 84.66 0.46 0.77 15 7 N -0.95 -59.20 13.96 21.45 0.30 -58.90 15 8 Si 0.95 42.77 27.47 68.60 1.88 44.66 15 9 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 10 H -0.29 -12.73 7.11 99.48 0.71 -12.03 15 11 H -0.24 -9.90 6.54 99.48 0.65 -9.25 15 12 C 0.12 3.40 5.24 85.56 0.45 3.85 15 13 C -0.16 -4.19 4.80 -20.68 -0.10 -4.29 15 14 C 0.11 2.87 11.07 84.85 0.94 3.81 15 15 N -0.50 -13.92 12.09 -62.59 -0.76 -14.68 15 16 S 0.26 5.69 23.72 -56.49 -1.34 4.35 15 17 C -0.19 -4.09 9.59 67.11 0.64 -3.45 15 18 H 0.07 2.20 6.23 -2.38 -0.01 2.19 15 19 H 0.04 1.91 6.76 -2.39 -0.02 1.89 15 20 H 0.03 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.04 1.61 6.99 -2.39 -0.02 1.59 15 22 H -0.01 -0.36 7.55 -2.39 -0.02 -0.37 15 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 24 H 0.09 2.44 7.92 -2.39 -0.02 2.42 15 25 H 0.05 1.38 8.10 -2.39 -0.02 1.36 15 26 H 0.19 4.60 8.06 -2.91 -0.02 4.58 15 27 H 0.20 3.33 8.06 -2.91 -0.02 3.31 15 Total: -1.00 -66.23 244.21 0.87 -65.36 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.10 Total: 2.48 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.10 Total: -17.69 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -4.88 Total: -99.16 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.34 Total: 4.35 kcal Total: -66.23 0.87 -65.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232224683.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.944 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds