Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.35133 * 127.24650 * 2 1 4 4 C 1.37812 * 114.75836 * 180.02562 * 3 2 1 5 5 C 1.50697 * 121.55856 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47455 * 95.00146 * 5 4 3 7 7 C 1.46501 * 119.99872 * 270.00054 * 6 5 4 8 8 C 1.36934 * 120.00303 * 89.99776 * 6 5 4 9 9 H 1.07996 * 120.00311 * 22.34872 * 8 6 5 10 10 C 1.38819 * 120.00100 * 202.35133 * 8 6 5 11 11 N 1.31615 * 119.99922 * 11.34279 * 10 8 6 12 12 Si 1.86796 * 120.00106 * 191.34162 * 10 8 6 13 13 H 1.48501 * 109.47209 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47402 * 119.99827 * 12 10 8 15 15 H 1.48493 * 109.47462 * 240.00053 * 12 10 8 16 16 N 1.30079 * 116.87846 * 0.27268 * 4 3 2 17 17 S 1.69601 * 107.15268 * 359.60698 * 16 4 3 18 18 H 1.08997 * 109.46789 * 89.99596 * 1 2 3 19 19 H 1.08992 * 109.46944 * 210.00027 * 1 2 3 20 20 H 1.08998 * 109.46668 * 329.99683 * 1 2 3 21 21 H 1.07998 * 122.62431 * 0.02613 * 3 2 1 22 22 H 1.09005 * 109.46666 * 215.00048 * 5 4 3 23 23 H 1.09000 * 109.47368 * 334.99309 * 5 4 3 24 24 H 1.08994 * 109.47546 * 94.21025 * 7 6 5 25 25 H 1.08998 * 109.47272 * 214.21589 * 7 6 5 26 26 H 1.08997 * 109.47023 * 334.20696 * 7 6 5 27 27 H 0.96998 * 120.00417 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3250 1.0757 0.0000 4 6 3.6705 0.7777 -0.0006 5 6 4.7182 1.8609 -0.0001 6 7 5.1447 2.1272 1.3759 7 6 4.4495 3.1391 2.1753 8 6 6.1931 1.4305 1.9149 9 1 6.9238 0.9682 1.2678 10 6 6.3166 1.3183 3.2930 11 7 5.3221 1.6819 4.0746 12 14 7.8943 0.6512 4.0380 13 1 8.8515 0.3170 2.9530 14 1 8.4943 1.6776 4.9278 15 1 7.5919 -0.5708 4.8256 16 7 3.9938 -0.4823 -0.0065 17 16 2.5484 -1.3695 -0.0008 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 1.9533 2.0897 0.0004 22 1 5.5757 1.5371 -0.5900 23 1 4.3013 2.7699 -0.4337 24 1 3.6728 2.6604 2.7717 25 1 5.1621 3.6330 2.8358 26 1 3.9963 3.8768 1.5133 27 1 5.4085 1.6039 5.0376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249582218.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = 57.968209 kcal Electronic energy + Delta-G solvation = -12004.941244 eV Core-core repulsion = 9890.228691 eV Total energy + Delta-G solvation = -2114.712553 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.47413 -35.26388 -32.59259 -31.14415 -27.60694 -26.97212 -25.81245 -22.39333 -20.53832 -18.78183 -17.28459 -16.62219 -15.01088 -14.51560 -14.07954 -13.51688 -13.37509 -13.12006 -12.60135 -12.39165 -12.19342 -11.60974 -11.19003 -10.88099 -10.73744 -10.50074 -10.31166 -10.01463 -9.93981 -9.65686 -8.76201 -8.58789 -7.97810 -6.86194 -5.77761 -3.20771 1.36337 2.12646 2.62541 3.19946 3.39522 3.45432 3.48673 4.50164 4.97466 5.35909 5.43111 5.56299 5.62393 5.77799 5.85083 6.04314 6.08631 6.29094 6.50003 6.69076 6.73793 7.32796 7.55951 7.68228 7.81659 8.33655 9.18081 9.77949 10.25494 11.27033 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.040224 B = 0.009522 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.936386 B = 2939.747681 C = 3147.164770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.183 4.183 3 C -0.187 4.187 4 C 0.111 3.889 5 C 0.207 3.793 6 N -0.579 5.579 7 C 0.160 3.840 8 C -0.246 4.246 9 H 0.074 0.926 10 C 0.003 3.997 11 N -0.905 5.905 12 Si 0.909 3.091 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.290 1.290 16 N -0.433 5.433 17 S 0.169 5.831 18 H 0.074 0.926 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.144 0.856 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.001 0.999 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 -0.471 -7.690 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.312 4.312 3 C -0.223 4.223 4 C -0.071 4.071 5 C 0.074 3.926 6 N -0.300 5.300 7 C 0.016 3.984 8 C -0.376 4.376 9 H 0.092 0.908 10 C -0.196 4.196 11 N -0.549 5.549 12 Si 0.739 3.261 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.217 1.217 16 N -0.253 5.253 17 S 0.322 5.678 18 H 0.093 0.907 19 H 0.088 0.912 20 H 0.093 0.907 21 H 0.162 0.838 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.335 -2.506 -7.496 10.783 hybrid contribution 0.014 1.226 0.810 1.470 sum -7.321 -1.279 -6.686 9.997 Atomic orbital electron populations 1.20181 0.87261 1.03166 1.02448 1.25181 1.01156 0.98762 1.06135 1.21116 0.92198 1.00511 1.08432 1.23088 0.95890 0.93873 0.94274 1.19960 0.92507 0.90909 0.89184 1.44274 1.34920 1.40642 1.10170 1.20896 0.96380 0.88741 0.92403 1.19355 0.99481 1.28757 0.90024 0.90777 1.25110 0.97855 0.99856 0.96763 1.70082 1.29857 1.51572 1.03403 0.86106 0.82733 0.78234 0.79070 1.20069 1.21522 1.21672 1.76986 1.15875 1.07560 1.24881 1.83779 0.96533 1.16730 1.70756 0.90733 0.91193 0.90664 0.83784 0.91684 0.91841 0.95261 0.93072 0.98033 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.46 36.01 0.38 -0.46 15 2 C -0.18 -3.02 6.60 -35.41 -0.23 -3.26 15 3 C -0.19 -3.41 9.90 -40.84 -0.40 -3.81 15 4 C 0.11 2.35 6.30 -83.49 -0.53 1.82 15 5 C 0.21 4.40 6.11 -5.20 -0.03 4.37 15 6 N -0.58 -14.72 2.91 -182.51 -0.53 -15.25 15 7 C 0.16 3.91 9.01 59.85 0.54 4.45 15 8 C -0.25 -6.90 9.67 -15.06 -0.15 -7.05 15 9 H 0.07 2.08 7.84 -52.49 -0.41 1.67 15 10 C 0.00 0.09 5.13 -17.43 -0.09 0.00 15 11 N -0.90 -26.75 10.58 55.49 0.59 -26.16 15 12 Si 0.91 22.46 29.57 -169.99 -5.03 17.43 15 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 15 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 16 N -0.43 -9.80 12.05 32.02 0.39 -9.42 15 17 S 0.17 3.13 23.72 -107.50 -2.55 0.58 15 18 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.14 2.29 8.06 -52.49 -0.42 1.87 15 22 H 0.06 1.37 8.03 -51.93 -0.42 0.95 15 23 H 0.06 1.13 7.81 -51.93 -0.41 0.73 15 24 H 0.03 0.78 7.42 -51.93 -0.39 0.39 15 25 H 0.05 1.33 7.19 -51.93 -0.37 0.96 15 26 H 0.00 0.02 7.84 -51.93 -0.41 -0.38 15 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 250.25 15.07 3.77 3.77 Total: -1.00 -31.58 250.25 -7.10 -38.68 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -3.23 Total: -5.69 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.51 Total: -3.94 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.44 Total: -50.83 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.55 Total: 0.58 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.58 -7.10 -38.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249582218.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.648 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds