Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.35133 * 127.24650 * 2 1 4 4 C 1.37812 * 114.75836 * 180.02562 * 3 2 1 5 5 C 1.50697 * 121.55856 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47455 * 95.00146 * 5 4 3 7 7 C 1.46501 * 119.99872 * 270.00054 * 6 5 4 8 8 C 1.36934 * 120.00303 * 89.99776 * 6 5 4 9 9 H 1.07996 * 120.00311 * 22.34872 * 8 6 5 10 10 C 1.38819 * 120.00100 * 202.35133 * 8 6 5 11 11 N 1.31615 * 119.99922 * 11.34279 * 10 8 6 12 12 Si 1.86796 * 120.00106 * 191.34162 * 10 8 6 13 13 H 1.48501 * 109.47209 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47402 * 119.99827 * 12 10 8 15 15 H 1.48493 * 109.47462 * 240.00053 * 12 10 8 16 16 N 1.30079 * 116.87846 * 0.27268 * 4 3 2 17 17 S 1.69601 * 107.15268 * 359.60698 * 16 4 3 18 18 H 1.08997 * 109.46789 * 89.99596 * 1 2 3 19 19 H 1.08992 * 109.46944 * 210.00027 * 1 2 3 20 20 H 1.08998 * 109.46668 * 329.99683 * 1 2 3 21 21 H 1.07998 * 122.62431 * 0.02613 * 3 2 1 22 22 H 1.09005 * 109.46666 * 215.00048 * 5 4 3 23 23 H 1.09000 * 109.47368 * 334.99309 * 5 4 3 24 24 H 1.08994 * 109.47546 * 94.21025 * 7 6 5 25 25 H 1.08998 * 109.47272 * 214.21589 * 7 6 5 26 26 H 1.08997 * 109.47023 * 334.20696 * 7 6 5 27 27 H 0.96998 * 120.00417 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3250 1.0757 0.0000 4 6 3.6705 0.7777 -0.0006 5 6 4.7182 1.8609 -0.0001 6 7 5.1447 2.1272 1.3759 7 6 4.4495 3.1391 2.1753 8 6 6.1931 1.4305 1.9149 9 1 6.9238 0.9682 1.2678 10 6 6.3166 1.3183 3.2930 11 7 5.3221 1.6819 4.0746 12 14 7.8943 0.6512 4.0380 13 1 8.8515 0.3170 2.9530 14 1 8.4943 1.6776 4.9278 15 1 7.5919 -0.5708 4.8256 16 7 3.9938 -0.4823 -0.0065 17 16 2.5484 -1.3695 -0.0008 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 1.9533 2.0897 0.0004 22 1 5.5757 1.5371 -0.5900 23 1 4.3013 2.7699 -0.4337 24 1 3.6728 2.6604 2.7717 25 1 5.1621 3.6330 2.8358 26 1 3.9963 3.8768 1.5133 27 1 5.4085 1.6039 5.0376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249582218.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = 37.842251 kcal Electronic energy + Delta-G solvation = -12005.813972 eV Core-core repulsion = 9890.228691 eV Total energy + Delta-G solvation = -2115.585281 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01142 -37.14512 -33.99587 -33.09662 -29.18753 -28.46463 -27.79525 -24.16402 -22.14256 -20.32301 -18.92984 -18.47557 -16.95600 -16.03318 -15.74785 -15.35266 -14.82040 -14.60337 -14.04454 -13.77071 -13.52548 -13.30855 -12.96595 -12.84289 -12.57474 -12.26295 -12.06516 -11.93931 -11.71215 -11.25190 -10.69294 -10.17405 -9.47619 -8.88484 -7.88813 -5.35417 -0.06025 0.72669 1.08773 1.41498 1.43220 1.53413 1.69302 2.48615 3.28260 3.71896 3.80120 4.26349 4.45134 4.49584 4.55931 4.74856 4.83475 4.87455 5.01086 5.06590 5.29502 5.33432 5.60402 5.71990 6.01092 6.28182 7.10616 7.78619 8.19794 9.14268 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.040224 B = 0.009522 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.936386 B = 2939.747681 C = 3147.164770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.158 4.158 3 C -0.211 4.211 4 C 0.103 3.897 5 C 0.206 3.794 6 N -0.598 5.598 7 C 0.176 3.824 8 C -0.253 4.253 9 H 0.066 0.934 10 C -0.050 4.050 11 N -0.935 5.935 12 Si 0.966 3.034 13 H -0.268 1.268 14 H -0.284 1.284 15 H -0.296 1.296 16 N -0.491 5.491 17 S 0.179 5.821 18 H 0.103 0.897 19 H 0.082 0.918 20 H 0.092 0.908 21 H 0.171 0.829 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.000 1.000 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 -0.305 -8.731 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.288 4.288 3 C -0.245 4.245 4 C -0.078 4.078 5 C 0.074 3.926 6 N -0.320 5.320 7 C 0.031 3.969 8 C -0.383 4.383 9 H 0.084 0.916 10 C -0.246 4.246 11 N -0.582 5.582 12 Si 0.795 3.205 13 H -0.193 1.193 14 H -0.210 1.210 15 H -0.224 1.224 16 N -0.312 5.312 17 S 0.332 5.668 18 H 0.122 0.878 19 H 0.101 0.899 20 H 0.110 0.890 21 H 0.188 0.812 22 H 0.077 0.923 23 H 0.119 0.881 24 H 0.018 0.982 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.908 -2.331 -8.572 12.580 hybrid contribution 0.355 1.104 0.960 1.505 sum -8.554 -1.227 -7.612 11.516 Atomic orbital electron populations 1.20439 0.83422 1.04636 1.04710 1.25839 1.03343 0.96886 1.02707 1.21308 0.91102 1.02343 1.09746 1.23155 0.97145 0.93403 0.94129 1.20045 0.92825 0.92703 0.86985 1.44333 1.35237 1.41125 1.11280 1.20645 0.94750 0.88940 0.92561 1.19506 1.00503 1.28123 0.90204 0.91649 1.25780 1.00574 1.00971 0.97236 1.70231 1.31381 1.53504 1.03097 0.85212 0.79807 0.77264 0.78264 1.19259 1.20985 1.22378 1.76804 1.18973 1.08770 1.26636 1.83632 0.95644 1.16949 1.70617 0.87847 0.89896 0.88975 0.81192 0.92340 0.88071 0.98185 0.95799 0.93731 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.46 71.24 0.75 -0.64 15 2 C -0.16 -4.73 6.60 24.97 0.16 -4.57 15 3 C -0.21 -7.13 9.90 21.45 0.21 -6.92 15 4 C 0.10 4.25 6.30 42.72 0.27 4.52 15 5 C 0.21 8.51 6.11 85.63 0.52 9.04 15 6 N -0.60 -30.30 2.91 -731.34 -2.13 -32.42 15 7 C 0.18 8.51 9.01 127.77 1.15 9.66 15 8 C -0.25 -14.37 9.67 84.04 0.81 -13.56 15 9 H 0.07 3.74 7.84 -2.91 -0.02 3.72 15 10 C -0.05 -2.91 5.13 84.86 0.44 -2.48 15 11 N -0.94 -56.50 10.58 21.65 0.23 -56.27 15 12 Si 0.97 46.98 29.57 68.60 2.03 49.00 15 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 14 H -0.28 -13.41 7.11 99.48 0.71 -12.70 15 15 H -0.30 -14.60 7.11 99.48 0.71 -13.90 15 16 N -0.49 -22.11 12.05 -52.59 -0.63 -22.75 15 17 S 0.18 6.35 23.72 -56.49 -1.34 5.01 15 18 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.08 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.17 4.77 8.06 -2.91 -0.02 4.74 15 22 H 0.06 2.45 8.03 -2.38 -0.02 2.43 15 23 H 0.10 3.33 7.81 -2.39 -0.02 3.31 15 24 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 15 25 H 0.02 1.24 7.19 -2.39 -0.02 1.23 15 26 H 0.04 1.73 7.84 -2.39 -0.02 1.71 15 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 15 Total: -1.00 -69.18 250.25 3.62 -65.56 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.15 Total: -3.18 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 4.31 Total: -4.96 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -2.53 Total: -111.44 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.34 Total: 5.01 kcal Total: -69.18 3.62 -65.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249582218.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.402 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds