Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.33861 * 124.52052 * 89.72409 * 10 9 7 12 12 C 1.37415 * 115.10660 * 179.79173 * 11 10 9 13 13 C 1.36746 * 113.28937 * 0.48631 * 12 11 10 14 14 C 1.46394 * 125.46238 * 179.76267 * 13 12 11 15 15 O 1.21636 * 119.99837 * 359.97438 * 14 13 12 16 16 O 1.34901 * 120.00312 * 179.97438 * 14 13 12 17 17 S 1.70617 * 124.51686 * 270.02328 * 10 9 7 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 20 20 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 21 21 H 1.07993 * 122.44290 * 359.97438 * 11 10 9 22 22 H 1.08007 * 123.35045 * 180.26458 * 12 11 10 23 23 H 0.96691 * 116.99938 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.7314 -4.2203 1.0876 12 6 3.6072 -5.2538 0.8573 13 6 3.8156 -5.4998 -0.4716 14 6 4.6980 -6.5335 -1.0158 15 8 5.3199 -7.2597 -0.2640 16 8 4.8213 -6.6806 -2.3511 17 16 2.8536 -4.3761 -1.4219 18 1 -0.4849 0.8401 0.0041 19 1 0.6280 -2.5591 0.8866 20 1 0.6206 -2.5548 -0.8933 21 1 2.4645 -3.8979 2.0832 22 1 4.0860 -5.8136 1.6472 23 1 5.4152 -7.3769 -2.6630 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054548.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = -93.713536 kcal Electronic energy + Delta-G solvation = -11194.569423 eV Core-core repulsion = 8905.153610 eV Total energy + Delta-G solvation = -2289.415813 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.08727 -38.86392 -37.02193 -35.40016 -32.65625 -29.25400 -26.50164 -24.08714 -23.29391 -19.98816 -19.55243 -18.59620 -18.07811 -16.81726 -16.68305 -16.55008 -15.43002 -14.68268 -14.35340 -14.13589 -13.73502 -13.39508 -13.00136 -12.65872 -12.57985 -12.52928 -12.03034 -11.76226 -11.67111 -11.60692 -10.63419 -9.62294 -9.49036 -8.25107 -6.38652 -0.52830 0.56117 1.06877 1.28871 1.41905 1.42853 1.53760 1.99061 2.09165 2.39713 3.07828 4.09659 4.29234 4.41671 4.54831 4.97376 5.18971 5.23868 5.35221 5.51031 5.56868 5.67956 6.04852 6.71888 6.94648 7.30661 8.84367 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.057724 B = 0.007243 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.954465 B = 3865.128888 C = 3923.428240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.080 3.920 10 C -0.149 4.149 11 C -0.188 4.188 12 C -0.023 4.023 13 C -0.316 4.316 14 C 0.573 3.427 15 O -0.543 6.543 16 O -0.506 6.506 17 S 0.253 5.747 18 H 0.268 0.732 19 H 0.025 0.975 20 H 0.016 0.984 21 H 0.149 0.851 22 H 0.167 0.833 23 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -9.342 -3.043 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.269 4.269 11 C -0.216 4.216 12 C -0.058 4.058 13 C -0.433 4.433 14 C 0.419 3.581 15 O -0.437 6.437 16 O -0.320 6.320 17 S 0.522 5.478 18 H 0.077 0.923 19 H 0.043 0.957 20 H 0.035 0.965 21 H 0.167 0.833 22 H 0.185 0.815 23 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 6.538 -8.885 -4.300 11.840 hybrid contribution 0.581 0.324 1.519 1.658 sum 7.119 -8.561 -2.781 11.477 Atomic orbital electron populations 1.70053 1.07559 1.28235 1.50609 1.25865 0.95754 1.02978 0.94292 0.85443 0.78608 0.78412 0.78632 1.19613 1.20493 1.19076 1.21339 0.93271 0.90708 1.51953 0.92310 1.17781 0.91833 0.88869 0.97381 1.25064 1.02387 1.00852 0.98624 1.20056 1.02103 0.99223 1.00238 1.20836 0.94867 0.95235 0.94835 1.23501 1.13448 1.08075 0.98317 1.19157 0.77947 0.80427 0.80571 1.90893 1.46511 1.45712 1.60578 1.84584 1.66096 1.58876 1.22439 1.82908 1.35373 1.23007 1.06545 0.92329 0.95735 0.96536 0.83339 0.81540 0.70167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.17 13.29 21.45 0.28 -52.89 14 2 C 0.01 0.56 5.46 84.66 0.46 1.03 14 3 Si 0.96 42.49 29.54 68.60 2.03 44.51 14 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 14 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 14 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 14 7 C -0.53 -28.84 9.09 25.60 0.23 -28.61 14 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 14 9 C 0.08 3.99 5.40 29.10 0.16 4.15 14 10 C -0.15 -6.11 5.47 24.69 0.14 -5.97 14 11 C -0.19 -6.82 9.99 21.08 0.21 -6.61 14 12 C -0.02 -0.74 10.01 21.73 0.22 -0.52 14 13 C -0.32 -10.23 6.45 24.04 0.16 -10.08 14 14 C 0.57 16.76 8.30 69.94 0.58 17.34 14 15 O -0.54 -17.90 17.63 19.39 0.34 -17.56 14 16 O -0.51 -11.04 13.29 -58.15 -0.77 -11.81 14 17 S 0.25 8.76 22.87 -56.49 -1.29 7.47 14 18 H 0.27 14.45 8.31 -92.71 -0.77 13.68 14 19 H 0.02 1.29 8.14 -2.38 -0.02 1.27 14 20 H 0.02 0.86 8.14 -2.39 -0.02 0.84 14 21 H 0.15 5.11 8.06 -2.91 -0.02 5.09 14 22 H 0.17 4.57 8.06 -2.91 -0.02 4.55 14 23 H 0.44 4.62 9.11 -74.06 -0.67 3.95 14 Total: -1.00 -63.21 235.67 3.31 -59.90 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: 0.57 Total: -0.34 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 2.15 Total: -29.28 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.28 Total: -52.89 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.43 Total: -29.37 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 8.76 SS G_CDS: -1.29 Total: 7.47 kcal Total: -63.21 3.31 -59.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054548.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.812 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds