Wall clock time and date at job start Sun Mar 29 2020 21:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.33861 * 122.44329 * 269.70615 * 10 9 7 12 12 S 1.70613 * 110.96326 * 179.89237 * 11 10 9 13 13 C 1.75832 * 91.56212 * 0.31505 * 12 11 10 14 14 C 1.46396 * 125.46297 * 179.79134 * 13 12 11 15 15 O 1.21628 * 120.00100 * 180.02562 * 14 13 12 16 16 O 1.34893 * 119.99834 * 0.03517 * 14 13 12 17 17 C 1.36747 * 109.07384 * 359.82218 * 13 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08004 * 124.51539 * 359.97438 * 11 10 9 22 22 H 0.96701 * 117.00686 * 180.02562 * 16 14 13 23 23 H 1.08004 * 123.35609 * 180.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6926 -4.1892 -1.1424 12 16 3.7826 -5.4585 -0.8084 13 6 3.5860 -5.2357 0.9246 14 6 4.2535 -6.0225 1.9632 15 8 4.0438 -5.7825 3.1370 16 8 5.1014 -7.0134 1.6183 17 6 2.7092 -4.2102 1.1467 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.4138 -3.8670 -2.1349 22 1 5.5180 -7.5054 2.3390 23 1 2.4220 -3.8776 2.1333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056609.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:18 Heat of formation + Delta-G solvation = -71.545214 kcal Electronic energy + Delta-G solvation = -11263.429539 eV Core-core repulsion = 8974.975017 eV Total energy + Delta-G solvation = -2288.454523 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.90284 -37.69099 -35.87814 -33.00833 -30.38683 -27.73593 -25.04061 -23.47972 -20.66821 -18.81417 -17.89367 -17.24195 -16.36116 -15.49073 -15.39997 -14.64079 -13.95455 -12.89968 -12.86831 -12.48551 -12.12972 -11.66656 -11.44628 -11.27380 -10.89897 -10.70894 -10.51640 -10.42850 -9.68892 -9.50323 -8.48158 -8.44502 -7.78827 -6.09217 -4.13426 0.78409 1.90066 2.37145 2.67474 3.15420 3.27988 3.34050 3.37056 3.45337 4.41194 5.25747 5.43158 5.65851 5.84678 6.00233 6.46920 6.55489 6.74126 6.96068 7.46078 7.65426 7.86205 7.97756 8.24493 8.91216 9.50902 11.00592 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.045363 B = 0.007665 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.101257 B = 3652.303754 C = 3865.253009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.068 3.932 10 C -0.080 4.080 11 C -0.224 4.224 12 S 0.181 5.819 13 C -0.285 4.285 14 C 0.562 3.438 15 O -0.515 6.515 16 O -0.516 6.516 17 C -0.014 4.014 18 H 0.263 0.737 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.167 0.833 22 H 0.411 0.589 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -11.172 -0.835 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.029 3.971 10 C -0.091 4.091 11 C -0.361 4.361 12 S 0.449 5.551 13 C -0.403 4.403 14 C 0.407 3.593 15 O -0.405 6.405 16 O -0.328 6.328 17 C -0.050 4.050 18 H 0.073 0.927 19 H 0.051 0.949 20 H 0.050 0.950 21 H 0.185 0.815 22 H 0.269 0.731 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.717 -11.782 -1.788 14.197 hybrid contribution -0.160 1.728 1.283 2.158 sum 7.558 -10.053 -0.505 12.587 Atomic orbital electron populations 1.69952 1.06036 1.26948 1.50237 1.25007 0.94897 0.99304 0.95057 0.86521 0.79871 0.83074 0.78175 1.20575 1.21088 1.19779 1.21070 0.93096 0.89897 1.51354 0.92427 1.18118 0.91834 0.88464 0.98688 1.19534 1.00642 0.98839 0.90127 1.25294 1.04313 1.02488 1.04007 1.82709 1.42484 1.32295 0.97580 1.23229 1.12443 1.08001 0.96578 1.19435 0.75762 0.77173 0.86968 1.90924 1.62217 1.67813 1.19572 1.84616 1.57277 1.46385 1.44530 1.20882 0.92058 0.91012 1.01054 0.92748 0.94934 0.95015 0.81535 0.73054 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 14 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 14 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 14 7 C -0.52 -14.16 9.09 -34.44 -0.31 -14.47 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 14 9 C 0.07 1.70 5.22 -29.03 -0.15 1.55 14 10 C -0.08 -1.67 4.97 -106.46 -0.53 -2.20 14 11 C -0.22 -4.01 10.67 29.20 0.31 -3.70 14 12 S 0.18 2.73 22.92 -107.50 -2.46 0.27 14 13 C -0.29 -4.96 6.45 -36.84 -0.24 -5.20 14 14 C 0.56 9.06 8.30 34.01 0.28 9.34 14 15 O -0.51 -9.57 17.63 -19.36 -0.34 -9.91 14 16 O -0.52 -6.19 13.29 -41.02 -0.55 -6.73 14 17 C -0.01 -0.28 9.79 -40.42 -0.40 -0.68 14 18 H 0.26 7.22 8.31 -40.82 -0.34 6.88 14 19 H 0.03 0.85 8.13 -51.93 -0.42 0.43 14 20 H 0.03 0.82 8.12 -51.93 -0.42 0.40 14 21 H 0.17 2.74 8.06 -52.48 -0.42 2.32 14 22 H 0.41 2.78 9.11 45.56 0.42 3.19 14 23 H 0.15 2.97 8.06 -52.48 -0.42 2.55 14 LS Contribution 235.47 15.07 3.55 3.55 Total: -1.00 -31.09 235.47 -6.03 -37.12 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -0.81 Total: -1.55 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.13 Total: -13.80 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.89 Total: -16.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.46 Total: 0.27 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.09 -6.03 -37.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056609.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.427 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds