Wall clock time and date at job start Sun Mar 29 2020 21:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.33861 * 122.44329 * 269.70615 * 10 9 7 12 12 S 1.70613 * 110.96326 * 179.89237 * 11 10 9 13 13 C 1.75832 * 91.56212 * 0.31505 * 12 11 10 14 14 C 1.46396 * 125.46297 * 179.79134 * 13 12 11 15 15 O 1.21628 * 120.00100 * 180.02562 * 14 13 12 16 16 O 1.34893 * 119.99834 * 0.03517 * 14 13 12 17 17 C 1.36747 * 109.07384 * 359.82218 * 13 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08004 * 124.51539 * 359.97438 * 11 10 9 22 22 H 0.96701 * 117.00686 * 180.02562 * 16 14 13 23 23 H 1.08004 * 123.35609 * 180.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6926 -4.1892 -1.1424 12 16 3.7826 -5.4585 -0.8084 13 6 3.5860 -5.2357 0.9246 14 6 4.2535 -6.0225 1.9632 15 8 4.0438 -5.7825 3.1370 16 8 5.1014 -7.0134 1.6183 17 6 2.7092 -4.2102 1.1467 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.4138 -3.8670 -2.1349 22 1 5.5180 -7.5054 2.3390 23 1 2.4220 -3.8776 2.1333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056609.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:18 Heat of formation + Delta-G solvation = -92.195375 kcal Electronic energy + Delta-G solvation = -11264.324998 eV Core-core repulsion = 8974.975017 eV Total energy + Delta-G solvation = -2289.349981 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.14147 -39.16802 -37.05321 -35.06185 -32.02567 -29.53339 -26.49240 -25.36294 -22.08757 -20.16406 -19.31562 -18.53786 -18.42108 -16.83412 -16.72394 -16.49353 -15.38236 -14.64826 -14.29724 -14.03810 -13.82875 -13.34327 -13.13478 -12.65868 -12.59701 -12.53749 -12.12919 -11.87847 -11.53837 -11.45619 -10.60471 -9.85685 -9.20812 -8.20289 -6.33392 -0.60791 0.57408 0.96256 1.28279 1.40717 1.41703 1.52784 1.96429 2.02431 2.42168 3.10889 4.17266 4.28273 4.35422 4.54816 5.02268 5.09319 5.26673 5.40192 5.48847 5.73494 5.81765 6.16403 6.78915 6.91687 7.35217 8.88714 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.045363 B = 0.007665 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.101257 B = 3652.303754 C = 3865.253009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.075 3.925 10 C -0.110 4.110 11 C -0.231 4.231 12 S 0.298 5.702 13 C -0.297 4.297 14 C 0.570 3.430 15 O -0.545 6.545 16 O -0.499 6.499 17 C -0.042 4.042 18 H 0.266 0.734 19 H 0.004 0.996 20 H 0.013 0.987 21 H 0.179 0.821 22 H 0.437 0.563 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 -12.219 -1.799 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.036 3.964 10 C -0.121 4.121 11 C -0.368 4.368 12 S 0.568 5.432 13 C -0.415 4.415 14 C 0.415 3.585 15 O -0.438 6.438 16 O -0.314 6.314 17 C -0.077 4.077 18 H 0.074 0.926 19 H 0.022 0.978 20 H 0.031 0.969 21 H 0.197 0.803 22 H 0.300 0.700 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.879 -12.868 -2.756 16.455 hybrid contribution -0.744 1.879 1.525 2.531 sum 9.135 -10.989 -1.232 14.343 Atomic orbital electron populations 1.70072 1.07604 1.27961 1.51246 1.25902 0.95755 1.03040 0.94623 0.85462 0.78524 0.78552 0.78629 1.19425 1.20646 1.19276 1.21420 0.93189 0.91321 1.50985 0.92626 1.17820 0.92272 0.89983 0.96317 1.19114 1.01870 0.99200 0.91947 1.25551 1.04407 1.03172 1.03710 1.82264 1.38547 1.28315 0.94098 1.23497 1.11592 1.07279 0.99147 1.19206 0.75797 0.77468 0.85981 1.90920 1.63321 1.68833 1.20760 1.84537 1.56064 1.45126 1.45654 1.20636 0.94133 0.92870 1.00079 0.92553 0.97798 0.96888 0.80327 0.70016 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 14 2 C 0.01 0.29 5.46 84.66 0.46 0.75 14 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 14 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 14 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 14 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 14 7 C -0.53 -29.91 9.09 25.60 0.23 -29.67 14 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 14 9 C 0.08 3.93 5.22 29.10 0.15 4.09 14 10 C -0.11 -4.65 4.97 -21.06 -0.10 -4.76 14 11 C -0.23 -7.92 10.67 66.82 0.71 -7.21 14 12 S 0.30 7.95 22.92 -56.49 -1.29 6.65 14 13 C -0.30 -9.84 6.45 24.05 0.16 -9.69 14 14 C 0.57 17.17 8.30 69.95 0.58 17.75 14 15 O -0.55 -19.80 17.63 19.42 0.34 -19.46 14 16 O -0.50 -10.04 13.29 -58.08 -0.77 -10.81 14 17 C -0.04 -1.65 9.79 21.72 0.21 -1.44 14 18 H 0.27 14.88 8.31 -92.70 -0.77 14.11 14 19 H 0.00 0.21 8.13 -2.38 -0.02 0.19 14 20 H 0.01 0.70 8.12 -2.39 -0.02 0.68 14 21 H 0.18 5.59 8.06 -2.91 -0.02 5.56 14 22 H 0.44 4.14 9.11 -74.06 -0.67 3.46 14 23 H 0.14 5.64 8.06 -2.91 -0.02 5.62 14 Total: -1.00 -67.93 235.47 3.56 -64.37 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 0.57 Total: -1.42 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 2.40 Total: -30.18 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.28 Total: -55.18 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.43 Total: -30.27 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.29 Total: 6.65 kcal Total: -67.93 3.56 -64.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056609.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.822 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds