Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38474 * 119.99799 * 2 1 4 4 F 1.35097 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.38427 * 119.99778 * 179.97438 * 3 2 1 6 6 C 1.38210 * 120.00190 * 0.02562 * 5 3 2 7 7 C 1.38430 * 119.99745 * 359.74991 * 6 5 3 8 8 F 1.35102 * 120.00122 * 180.25257 * 7 6 5 9 9 C 1.38154 * 120.00041 * 180.02562 * 2 1 3 10 10 C 1.50700 * 120.00147 * 0.02562 * 9 2 1 11 11 C 1.50702 * 109.46869 * 89.99761 * 10 9 2 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.08998 * 109.47780 * 269.98506 * 1 2 3 20 20 H 1.09003 * 109.46764 * 29.98672 * 1 2 3 21 21 H 1.09001 * 109.46838 * 149.97878 * 1 2 3 22 22 H 1.08003 * 119.99804 * 180.02562 * 5 3 2 23 23 H 1.08001 * 120.00096 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.47210 * 330.00054 * 10 9 2 25 25 H 1.08994 * 109.47551 * 209.99707 * 10 9 2 26 26 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1992 0.0000 4 9 1.5239 2.3692 -0.0005 5 6 3.5836 1.1992 0.0005 6 6 4.2747 0.0023 0.0005 7 6 3.5825 -1.1965 0.0052 8 9 4.2580 -2.3665 0.0104 9 6 2.1978 -1.1964 -0.0005 10 6 1.4443 -2.5016 -0.0017 11 6 1.1937 -2.9356 -1.4229 12 1 1.5452 -2.3274 -2.2433 13 6 0.5210 -4.1123 -1.6760 14 7 0.0933 -4.8531 -0.6770 15 14 0.2171 -4.6541 -3.4376 16 1 1.3516 -5.4933 -3.9001 17 1 -1.0401 -5.4416 -3.5034 18 1 0.0983 -3.4582 -4.3099 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3633 -0.8898 -0.5142 22 1 4.1236 2.1346 0.0010 23 1 5.3547 0.0023 0.0014 24 1 0.4917 -2.3716 0.5119 25 1 2.0332 -3.2616 0.5118 26 1 -0.3803 -5.6807 -0.8551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057961.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = -85.347543 kcal Electronic energy + Delta-G solvation = -13701.433474 eV Core-core repulsion = 10994.373145 eV Total energy + Delta-G solvation = -2707.060329 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.53407 -48.17093 -38.57960 -33.80287 -32.22156 -30.41716 -27.43344 -26.41174 -23.53148 -21.31907 -20.62895 -16.82955 -16.72934 -16.53011 -16.39625 -15.35963 -14.70206 -14.57999 -13.93279 -13.27890 -13.16903 -12.83513 -12.60651 -12.28683 -12.00444 -11.37694 -11.18811 -11.12377 -10.91352 -10.63584 -10.42326 -9.68824 -9.54287 -8.48315 -8.20195 -7.89027 -6.10855 -4.15360 1.47824 1.61749 3.27959 3.34252 3.37803 3.89816 4.40186 4.62594 4.79222 5.08395 5.18835 5.25672 5.55096 5.68004 5.98110 6.15859 6.27967 6.39114 6.47159 6.61687 6.72308 6.91011 7.32688 7.47809 7.57384 7.83682 8.19520 8.88378 9.48735 10.99114 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.010218 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.844322 B = 2739.659003 C = 3147.969348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C 0.077 3.923 4 F -0.144 7.144 5 C -0.150 4.150 6 C -0.138 4.138 7 C 0.087 3.913 8 F -0.132 7.132 9 C -0.045 4.045 10 C 0.048 3.952 11 C -0.513 4.513 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.134 0.866 23 H 0.135 0.865 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 9.396 1.656 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C 0.058 3.942 4 F -0.123 7.123 5 C -0.169 4.169 6 C -0.157 4.157 7 C 0.067 3.933 8 F -0.111 7.111 9 C -0.046 4.046 10 C 0.011 3.989 11 C -0.551 4.551 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 H 0.086 0.914 20 H 0.079 0.921 21 H 0.116 0.884 22 H 0.151 0.849 23 H 0.152 0.848 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.032 9.226 1.698 10.211 hybrid contribution -0.019 -0.330 -0.959 1.014 sum 4.013 8.897 0.739 9.788 Atomic orbital electron populations 1.20789 0.89814 1.04193 1.02404 1.19686 0.97513 0.90349 1.01937 1.17546 0.89905 0.80889 1.05858 1.91425 1.80526 1.46087 1.94247 1.20653 0.92015 0.98590 1.05682 1.20821 1.00316 0.90649 1.03953 1.17595 0.90018 0.81207 1.04455 1.91483 1.79724 1.46091 1.93778 1.20565 0.91853 0.98101 0.94090 1.18386 0.95251 0.86745 0.98505 1.20940 1.36777 1.06505 0.90910 0.92451 1.24979 0.95436 0.96244 0.97375 1.69950 1.38172 1.14047 1.30778 0.86516 0.77740 0.78811 0.84571 1.20489 1.21057 1.19735 0.91385 0.92093 0.88352 0.84857 0.84753 0.94102 0.94595 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.02 36.01 0.32 -1.75 15 2 C -0.09 -1.82 5.88 -104.57 -0.62 -2.43 15 3 C 0.08 1.34 7.24 -39.42 -0.29 1.05 15 4 F -0.14 -2.39 16.47 2.25 0.04 -2.35 15 5 C -0.15 -2.31 10.02 -39.52 -0.40 -2.70 15 6 C -0.14 -2.24 10.02 -39.52 -0.40 -2.63 15 7 C 0.09 1.74 7.24 -39.42 -0.29 1.45 15 8 F -0.13 -2.83 16.47 2.25 0.04 -2.79 15 9 C -0.05 -0.98 5.07 -104.57 -0.53 -1.51 15 10 C 0.05 1.21 4.25 -29.03 -0.12 1.08 15 11 C -0.51 -14.08 8.69 -34.44 -0.30 -14.38 15 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 14 N -0.89 -25.81 13.29 55.43 0.74 -25.07 15 15 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 20 H 0.06 0.98 7.64 -51.93 -0.40 0.58 15 21 H 0.10 1.99 6.36 -51.93 -0.33 1.66 15 22 H 0.13 1.61 8.06 -52.48 -0.42 1.19 15 23 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.04 1.05 6.70 -51.93 -0.35 0.70 15 25 H 0.04 0.98 7.63 -51.93 -0.40 0.58 15 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 238.63 15.07 3.60 3.60 Total: -1.00 -28.61 238.63 -5.60 -34.21 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -2.28 Total: -3.64 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.70 Total: -20.21 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.74 Total: -25.07 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.07 Total: -5.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.61 -5.60 -34.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057961.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.138 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds