Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38474 * 119.99799 * 2 1 4 4 F 1.35097 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.38427 * 119.99778 * 179.97438 * 3 2 1 6 6 C 1.38210 * 120.00190 * 0.02562 * 5 3 2 7 7 C 1.38430 * 119.99745 * 359.74991 * 6 5 3 8 8 F 1.35102 * 120.00122 * 180.25257 * 7 6 5 9 9 C 1.38154 * 120.00041 * 180.02562 * 2 1 3 10 10 C 1.50700 * 120.00147 * 0.02562 * 9 2 1 11 11 C 1.50702 * 109.46869 * 89.99761 * 10 9 2 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.08998 * 109.47780 * 269.98506 * 1 2 3 20 20 H 1.09003 * 109.46764 * 29.98672 * 1 2 3 21 21 H 1.09001 * 109.46838 * 149.97878 * 1 2 3 22 22 H 1.08003 * 119.99804 * 180.02562 * 5 3 2 23 23 H 1.08001 * 120.00096 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.47210 * 330.00054 * 10 9 2 25 25 H 1.08994 * 109.47551 * 209.99707 * 10 9 2 26 26 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1992 0.0000 4 9 1.5239 2.3692 -0.0005 5 6 3.5836 1.1992 0.0005 6 6 4.2747 0.0023 0.0005 7 6 3.5825 -1.1965 0.0052 8 9 4.2580 -2.3665 0.0104 9 6 2.1978 -1.1964 -0.0005 10 6 1.4443 -2.5016 -0.0017 11 6 1.1937 -2.9356 -1.4229 12 1 1.5452 -2.3274 -2.2433 13 6 0.5210 -4.1123 -1.6760 14 7 0.0933 -4.8531 -0.6770 15 14 0.2171 -4.6541 -3.4376 16 1 1.3516 -5.4933 -3.9001 17 1 -1.0401 -5.4416 -3.5034 18 1 0.0983 -3.4582 -4.3099 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3633 -0.8898 -0.5142 22 1 4.1236 2.1346 0.0010 23 1 5.3547 0.0023 0.0014 24 1 0.4917 -2.3716 0.5119 25 1 2.0332 -3.2616 0.5118 26 1 -0.3803 -5.6807 -0.8551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057961.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = -100.763699 kcal Electronic energy + Delta-G solvation = -13702.101969 eV Core-core repulsion = 10994.373145 eV Total energy + Delta-G solvation = -2707.728823 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.86989 -49.76182 -40.04731 -35.64755 -33.93455 -32.05752 -29.16200 -27.92609 -25.42796 -22.79498 -22.19456 -18.61453 -18.29987 -18.04761 -18.02003 -16.80337 -16.53153 -16.23806 -15.31366 -14.79640 -14.60437 -14.54004 -14.23156 -13.98745 -13.55736 -13.16506 -12.91381 -12.69624 -12.53708 -12.43226 -12.23653 -11.59614 -11.39015 -10.62729 -9.69493 -9.37308 -8.23267 -6.35945 0.04683 0.20409 1.39047 1.39873 1.50966 2.34994 2.51164 3.08380 3.25266 3.36923 3.72900 3.85297 4.14118 4.23726 4.61786 4.75099 4.83638 4.98851 5.04260 5.10790 5.16850 5.31675 5.39565 5.67045 5.69526 5.93387 6.11527 6.74422 7.32218 8.86715 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.010218 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.844322 B = 2739.659003 C = 3147.969348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C 0.079 3.921 4 F -0.136 7.136 5 C -0.126 4.126 6 C -0.120 4.120 7 C 0.062 3.938 8 F -0.149 7.149 9 C -0.079 4.079 10 C 0.059 3.941 11 C -0.526 4.526 12 H 0.052 0.948 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.264 1.264 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.181 0.819 23 H 0.174 0.826 24 H 0.024 0.976 25 H 0.001 0.999 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 11.527 0.799 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C 0.060 3.940 4 F -0.115 7.115 5 C -0.145 4.145 6 C -0.138 4.138 7 C 0.043 3.957 8 F -0.127 7.127 9 C -0.080 4.080 10 C 0.023 3.977 11 C -0.564 4.564 12 H 0.071 0.929 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.202 1.202 18 H -0.189 1.189 19 H 0.098 0.902 20 H 0.099 0.901 21 H 0.085 0.915 22 H 0.198 0.802 23 H 0.192 0.808 24 H 0.043 0.957 25 H 0.019 0.981 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.149 11.371 0.843 12.511 hybrid contribution -0.337 -0.893 -0.639 1.149 sum 4.813 10.478 0.204 11.532 Atomic orbital electron populations 1.20736 0.89560 1.03520 1.03035 1.19766 0.98006 0.90637 1.02324 1.17588 0.90791 0.80246 1.05400 1.91450 1.80605 1.45325 1.94118 1.21157 0.91074 1.00059 1.02176 1.21195 1.02155 0.88978 1.01507 1.17968 0.89687 0.82164 1.05931 1.91436 1.79835 1.47375 1.94104 1.20266 0.92802 0.97070 0.97847 1.18039 0.94404 0.88291 0.97016 1.21220 1.36573 1.06683 0.91880 0.92945 1.25859 0.95127 0.96297 1.01669 1.70067 1.38996 1.14555 1.33011 0.85480 0.77845 0.78561 0.79427 1.19988 1.20228 1.18863 0.90189 0.90119 0.91472 0.80204 0.80837 0.95741 0.98070 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 9.02 71.24 0.64 -3.40 15 2 C -0.11 -4.06 5.88 -19.83 -0.12 -4.17 15 3 C 0.08 2.50 7.24 22.37 0.16 2.66 15 4 F -0.14 -4.03 16.47 44.97 0.74 -3.29 15 5 C -0.13 -3.27 10.02 22.31 0.22 -3.05 15 6 C -0.12 -3.44 10.02 22.31 0.22 -3.22 15 7 C 0.06 2.44 7.24 22.37 0.16 2.61 15 8 F -0.15 -6.47 16.47 44.97 0.74 -5.73 15 9 C -0.08 -3.47 5.07 -19.83 -0.10 -3.57 15 10 C 0.06 3.16 4.25 29.10 0.12 3.29 15 11 C -0.53 -29.85 8.69 25.60 0.22 -29.63 15 12 H 0.05 2.95 7.74 -2.91 -0.02 2.93 15 13 C 0.01 0.52 5.46 84.66 0.46 0.98 15 14 N -0.93 -55.45 13.29 21.45 0.28 -55.16 15 15 Si 0.96 44.16 29.54 68.60 2.03 46.18 15 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 19 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 20 H 0.08 2.51 7.64 -2.39 -0.02 2.49 15 21 H 0.07 2.83 6.36 -2.39 -0.02 2.81 15 22 H 0.18 3.08 8.06 -2.91 -0.02 3.06 15 23 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 24 H 0.02 1.34 6.70 -2.38 -0.02 1.32 15 25 H 0.00 0.06 7.63 -2.39 -0.02 0.04 15 26 H 0.27 14.94 8.31 -92.70 -0.77 14.17 15 Total: -1.00 -63.58 238.63 6.99 -56.59 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: 1.19 Total: -1.10 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 2.00 Total: -37.50 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 1.48 Total: -9.02 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.58 6.99 -56.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057961.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.177 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds