Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48495 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47400 * 300.00445 * 3 2 1 6 6 H 1.48506 * 109.46961 * 60.00679 * 3 2 1 7 7 C 1.37875 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47019 * 180.02562 * 10 9 7 12 12 C 1.33386 * 122.53910 * 269.97685 * 11 10 9 13 13 S 1.75887 * 109.59283 * 179.77507 * 12 11 10 14 14 C 1.75881 * 90.96836 * 0.31580 * 13 12 11 15 15 C 1.50703 * 125.19973 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.47171 * 269.69487 * 15 14 13 17 17 C 1.33384 * 109.59619 * 359.68334 * 14 13 12 18 18 H 0.97003 * 120.00132 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47075 * 60.00453 * 9 7 2 20 20 H 1.09001 * 109.47536 * 300.00150 * 9 7 2 21 21 H 1.09001 * 109.47371 * 60.00533 * 10 9 7 22 22 H 1.09007 * 109.47236 * 299.99868 * 10 9 7 23 23 H 1.08002 * 125.20183 * 0.06291 * 12 11 10 24 24 H 1.09002 * 109.47152 * 149.69271 * 15 14 13 25 25 H 1.09001 * 109.46980 * 29.69371 * 15 14 13 26 26 H 0.96701 * 113.99881 * 180.02562 * 16 15 14 27 27 H 1.08001 * 122.54029 * 180.26340 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 6 1.1330 -5.5891 1.1230 13 16 0.2703 -7.0702 0.7282 14 6 0.4591 -6.7569 -0.9921 15 6 -0.0535 -7.6432 -2.0979 16 8 0.9511 -8.5972 -2.4481 17 6 1.1198 -5.6117 -1.1684 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 2.8718 -3.6044 0.8895 22 1 2.8719 -3.6043 -0.8906 23 1 1.3367 -5.2348 2.1227 24 1 -0.2958 -7.0343 -2.9689 25 1 -0.9484 -8.1656 -1.7595 26 1 0.6894 -9.2021 -3.1557 27 1 1.3471 -5.2169 -2.1477 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = -35.230212 kcal Electronic energy + Delta-G solvation = -11372.499103 eV Core-core repulsion = 9221.452412 eV Total energy + Delta-G solvation = -2151.046691 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.24030 -36.65987 -33.48231 -31.52907 -29.39847 -25.81337 -25.39178 -22.08840 -20.34279 -18.48083 -17.54431 -16.81904 -16.23041 -15.04122 -14.47438 -14.29533 -13.41785 -12.97774 -12.87670 -12.22192 -12.09224 -11.74455 -11.56271 -11.03956 -10.92027 -10.62729 -10.37772 -10.12176 -9.80419 -9.57917 -9.07460 -8.37355 -8.31152 -7.82652 -5.99338 -4.02259 1.30323 1.96832 2.34706 3.15889 3.31365 3.38845 3.43285 4.36897 4.46887 5.02570 5.12534 5.36270 5.37604 5.56862 5.88162 6.00190 6.26381 6.46849 6.65023 6.79780 7.01042 7.12715 7.49382 7.69495 7.83371 8.01070 8.41528 9.05136 9.61790 11.11754 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.056721 B = 0.006089 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.528662 B = 4597.015199 C = 4758.032370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.060 4.060 11 C -0.081 4.081 12 C -0.209 4.209 13 S 0.069 5.931 14 C -0.199 4.199 15 C 0.153 3.847 16 O -0.567 6.567 17 C -0.096 4.096 18 H 0.260 0.740 19 H 0.017 0.983 20 H 0.017 0.983 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.163 0.837 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.378 0.622 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 -14.447 -2.546 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.100 4.100 11 C -0.092 4.092 12 C -0.344 4.344 13 S 0.334 5.666 14 C -0.315 4.315 15 C 0.074 3.926 16 O -0.373 6.373 17 C -0.128 4.128 18 H 0.069 0.931 19 H 0.036 0.964 20 H 0.035 0.965 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.180 0.820 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.225 0.775 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.005 -15.189 -1.196 15.269 hybrid contribution 0.648 1.865 -1.171 2.296 sum -0.357 -13.324 -2.367 13.537 Atomic orbital electron populations 1.69985 1.06062 1.26472 1.50865 1.25028 0.94843 0.99256 0.95336 0.86539 0.80135 0.83785 0.77566 1.19703 1.21020 1.21027 1.21302 0.93120 0.90965 1.50554 0.92511 1.19076 0.93719 0.90467 0.97521 1.20589 0.98008 0.90044 1.01315 1.19359 1.00159 0.98403 0.91314 1.25407 1.07454 0.98863 1.02689 1.83828 1.58095 1.24659 1.00051 1.23940 1.10111 1.00822 0.96654 1.20341 0.89201 0.89135 0.93940 1.86600 1.42842 1.48587 1.59269 1.20129 0.98371 0.94307 0.99985 0.93062 0.96445 0.96450 0.92185 0.92132 0.81997 0.91711 0.92806 0.77513 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.77 4.96 -27.88 -0.14 0.64 15 10 C -0.06 -1.27 5.41 -27.88 -0.15 -1.42 15 11 C -0.08 -1.55 5.06 -106.25 -0.54 -2.09 15 12 C -0.21 -3.66 10.98 29.04 0.32 -3.34 15 13 S 0.07 1.06 23.33 -107.50 -2.51 -1.44 15 14 C -0.20 -3.14 6.14 -36.00 -0.22 -3.37 15 15 C 0.15 1.86 7.54 36.01 0.27 2.13 15 16 O -0.57 -6.79 13.64 -35.23 -0.48 -7.27 15 17 C -0.10 -1.70 9.85 -41.21 -0.41 -2.10 15 18 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 19 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 20 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.06 1.23 8.12 -51.93 -0.42 0.81 15 22 H 0.06 1.25 8.13 -51.93 -0.42 0.82 15 23 H 0.16 2.60 8.06 -52.49 -0.42 2.18 15 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 26 H 0.38 2.38 9.12 45.56 0.42 2.79 15 27 H 0.14 2.29 8.06 -52.49 -0.42 1.87 15 LS Contribution 255.70 15.07 3.85 3.85 Total: -1.00 -32.26 255.70 -7.20 -39.46 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.76 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -1.27 Total: -23.17 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.48 Total: -7.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.26 -7.20 -39.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.233 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds