Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48495 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47400 * 300.00445 * 3 2 1 6 6 H 1.48506 * 109.46961 * 60.00679 * 3 2 1 7 7 C 1.37875 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47019 * 180.02562 * 10 9 7 12 12 C 1.33386 * 122.53910 * 269.97685 * 11 10 9 13 13 S 1.75887 * 109.59283 * 179.77507 * 12 11 10 14 14 C 1.75881 * 90.96836 * 0.31580 * 13 12 11 15 15 C 1.50703 * 125.19973 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.47171 * 269.69487 * 15 14 13 17 17 C 1.33384 * 109.59619 * 359.68334 * 14 13 12 18 18 H 0.97003 * 120.00132 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47075 * 60.00453 * 9 7 2 20 20 H 1.09001 * 109.47536 * 300.00150 * 9 7 2 21 21 H 1.09001 * 109.47371 * 60.00533 * 10 9 7 22 22 H 1.09007 * 109.47236 * 299.99868 * 10 9 7 23 23 H 1.08002 * 125.20183 * 0.06291 * 12 11 10 24 24 H 1.09002 * 109.47152 * 149.69271 * 15 14 13 25 25 H 1.09001 * 109.46980 * 29.69371 * 15 14 13 26 26 H 0.96701 * 113.99881 * 180.02562 * 16 15 14 27 27 H 1.08001 * 122.54029 * 180.26340 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 6 1.1330 -5.5891 1.1230 13 16 0.2703 -7.0702 0.7282 14 6 0.4591 -6.7569 -0.9921 15 6 -0.0535 -7.6432 -2.0979 16 8 0.9511 -8.5972 -2.4481 17 6 1.1198 -5.6117 -1.1684 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 2.8718 -3.6044 0.8895 22 1 2.8719 -3.6043 -0.8906 23 1 1.3367 -5.2348 2.1227 24 1 -0.2958 -7.0343 -2.9689 25 1 -0.9484 -8.1656 -1.7595 26 1 0.6894 -9.2021 -3.1557 27 1 1.3471 -5.2169 -2.1477 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -57.218747 kcal Electronic energy + Delta-G solvation = -11373.452598 eV Core-core repulsion = 9221.452412 eV Total energy + Delta-G solvation = -2152.000186 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56004 -37.65981 -35.50134 -33.24700 -30.96391 -27.34523 -26.96838 -23.87477 -21.86984 -19.86428 -18.56274 -18.41729 -17.95318 -16.53005 -16.25950 -15.34168 -14.92703 -14.58629 -14.46120 -13.86173 -13.59813 -13.45124 -12.90541 -12.79861 -12.57945 -12.41130 -11.85149 -11.70762 -11.54411 -11.14970 -10.98235 -10.56642 -9.64349 -9.17343 -8.19801 -6.31894 0.00023 0.71898 1.02442 1.40612 1.40740 1.54431 1.76574 2.41545 3.12949 3.46665 4.03525 4.16119 4.23777 4.39045 4.54429 4.62171 4.72822 4.86474 5.07324 5.16664 5.41599 5.49450 5.55440 5.81179 5.83858 6.22735 6.84969 6.90456 7.37533 8.91948 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.056721 B = 0.006089 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.528662 B = 4597.015199 C = 4758.032370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.038 3.962 10 C -0.046 4.046 11 C -0.105 4.105 12 C -0.224 4.224 13 S 0.119 5.881 14 C -0.198 4.198 15 C 0.152 3.848 16 O -0.586 6.586 17 C -0.125 4.125 18 H 0.264 0.736 19 H -0.010 1.010 20 H -0.010 1.010 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.170 0.830 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.403 0.597 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -15.224 -2.785 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.086 4.086 11 C -0.117 4.117 12 C -0.360 4.360 13 S 0.384 5.616 14 C -0.315 4.315 15 C 0.073 3.927 16 O -0.396 6.396 17 C -0.156 4.156 18 H 0.072 0.928 19 H 0.008 0.992 20 H 0.008 0.992 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.188 0.812 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.254 0.746 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.648 -15.997 -1.449 16.076 hybrid contribution 0.479 1.993 -1.094 2.323 sum -0.168 -14.004 -2.543 14.234 Atomic orbital electron populations 1.70118 1.07865 1.27722 1.51667 1.26001 0.95770 1.03417 0.94668 0.85370 0.79105 0.78611 0.77784 1.18475 1.20332 1.20371 1.21737 0.93667 0.92177 1.50551 0.91900 1.18904 0.94000 0.92277 0.94783 1.20297 0.96990 0.89704 1.01619 1.19251 1.01616 0.98055 0.92745 1.25655 1.07414 1.00132 1.02756 1.83608 1.56344 1.22263 0.99369 1.24524 1.08232 1.00560 0.98206 1.20443 0.89570 0.89289 0.93372 1.86520 1.43248 1.49121 1.60683 1.20178 1.00241 0.95517 0.99656 0.92764 0.99164 0.99183 0.91751 0.91844 0.81243 0.90242 0.90513 0.74606 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 15 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 7 C -0.54 -31.41 9.11 25.60 0.23 -31.18 15 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 15 9 C 0.04 2.05 4.96 29.85 0.15 2.20 15 10 C -0.05 -2.01 5.41 29.85 0.16 -1.85 15 11 C -0.10 -4.05 5.06 -20.92 -0.11 -4.16 15 12 C -0.22 -7.76 10.98 66.72 0.73 -7.03 15 13 S 0.12 3.44 23.33 -56.49 -1.32 2.12 15 14 C -0.20 -5.96 6.14 24.59 0.15 -5.81 15 15 C 0.15 3.29 7.54 71.24 0.54 3.83 15 16 O -0.59 -12.44 13.64 -148.98 -2.03 -14.47 15 17 C -0.12 -4.38 9.85 21.22 0.21 -4.17 15 18 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 19 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 20 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 21 H 0.06 2.68 8.12 -2.39 -0.02 2.66 15 22 H 0.06 2.66 8.13 -2.38 -0.02 2.64 15 23 H 0.17 5.41 8.06 -2.91 -0.02 5.38 15 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15 26 H 0.40 3.85 9.12 -74.06 -0.68 3.17 15 27 H 0.14 4.69 8.06 -2.91 -0.02 4.66 15 Total: -1.00 -69.11 255.70 1.98 -67.13 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 0.49 Total: 3.65 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 2.53 Total: -47.76 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.30 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -2.03 Total: -14.47 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.32 Total: 2.12 kcal Total: -69.11 1.98 -67.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.913 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds