Wall clock time and date at job start Sun Mar 29 2020 21:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47448 * 239.99993 * 3 2 1 5 5 H 1.48499 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47081 * 119.99883 * 3 2 1 7 7 C 1.37883 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99540 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47308 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46967 * 179.97438 * 11 10 9 13 13 C 1.27761 * 115.02009 * 95.02291 * 12 11 10 14 14 C 1.50078 * 127.05719 * 181.24531 * 13 12 11 15 15 S 1.81837 * 109.17803 * 341.82915 * 14 13 12 16 16 C 1.82095 * 101.17863 * 44.23000 * 15 14 13 17 17 C 1.48963 * 115.02227 * 274.99705 * 12 11 10 18 18 H 0.96994 * 120.00399 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47435 * 59.99411 * 9 7 2 20 20 H 1.09003 * 109.47037 * 300.00045 * 9 7 2 21 21 H 1.08997 * 109.47312 * 59.99386 * 10 9 7 22 22 H 1.09005 * 109.46632 * 299.99989 * 10 9 7 23 23 H 1.09004 * 109.47368 * 59.99983 * 11 10 9 24 24 H 1.08999 * 109.47036 * 299.99406 * 11 10 9 25 25 H 1.07995 * 116.46822 * 1.26463 * 13 12 11 26 26 H 1.08997 * 109.52753 * 101.70155 * 14 13 12 27 27 H 1.09003 * 109.52023 * 221.83450 * 14 13 12 28 28 H 1.09002 * 109.74592 * 178.57235 * 16 15 14 29 29 H 1.09000 * 109.74801 * 57.89860 * 16 15 14 30 30 H 1.08998 * 108.95704 * 40.08528 * 17 12 11 31 31 H 1.08999 * 108.95958 * 281.43322 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 6 2.7346 -6.6090 1.1536 14 6 3.6873 -7.7254 1.4672 15 16 4.0105 -8.6781 -0.0475 16 6 4.2539 -7.3415 -1.2600 17 6 2.9575 -6.5351 -1.3445 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5572 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8720 -3.6044 0.8904 22 1 2.8719 -3.6043 -0.8895 23 1 0.8533 -5.0452 -0.8886 24 1 0.8540 -5.0446 0.8914 25 1 2.2259 -6.1599 1.9938 26 1 4.6230 -7.3111 1.8428 27 1 3.2485 -8.3775 2.2224 28 1 4.4869 -7.7675 -2.2359 29 1 5.0695 -6.6947 -0.9365 30 1 3.1359 -5.6390 -1.9388 31 1 2.1960 -7.1393 -1.8377 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065713.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:44 Heat of formation + Delta-G solvation = -14.495409 kcal Electronic energy + Delta-G solvation = -11759.560047 eV Core-core repulsion = 9745.245579 eV Total energy + Delta-G solvation = -2014.314468 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.97334 -33.97138 -31.99267 -31.63297 -28.85754 -25.62479 -23.71736 -22.69528 -20.16180 -18.42195 -16.42498 -15.98794 -14.97959 -14.55044 -14.48316 -14.19677 -14.02254 -13.34792 -12.76068 -12.63205 -12.40470 -11.75440 -11.40736 -11.21786 -10.87971 -10.73142 -10.67626 -10.48142 -9.92004 -9.66751 -9.35903 -9.15609 -8.61578 -8.35149 -7.75590 -6.00335 -4.02935 1.70012 2.29094 2.53234 3.32405 3.36847 3.39304 4.45194 4.67702 4.77661 4.98409 5.15006 5.22211 5.35167 5.37893 5.49353 5.70675 5.84380 5.90425 5.98324 6.13247 6.28620 6.61783 6.64495 6.87822 7.12011 7.18491 7.66861 7.81798 7.99780 8.42530 9.04111 9.61103 11.10946 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.064746 B = 0.005365 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.352727 B = 5217.545286 C = 5286.483310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.096 4.096 12 C -0.095 4.095 13 C -0.180 4.180 14 C -0.039 4.039 15 S -0.281 6.281 16 C -0.075 4.075 17 C -0.083 4.083 18 H 0.261 0.739 19 H 0.015 0.985 20 H 0.015 0.985 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -14.217 -0.320 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.134 4.134 12 C -0.095 4.095 13 C -0.199 4.199 14 C -0.187 4.187 15 S -0.055 6.055 16 C -0.223 4.223 17 C -0.122 4.122 18 H 0.071 0.929 19 H 0.034 0.966 20 H 0.033 0.967 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.371 -15.219 -0.460 16.505 hybrid contribution 0.366 2.295 0.250 2.337 sum 6.737 -12.924 -0.210 14.576 Atomic orbital electron populations 1.69951 1.06059 1.26702 1.50828 1.25026 0.94841 0.99229 0.95333 0.86666 0.79600 0.83174 0.78612 1.20246 1.21251 1.20261 1.21229 0.92964 0.91164 1.50638 0.92838 1.19112 0.94017 0.91355 0.97171 1.21609 0.98951 0.93176 1.00265 1.21125 0.96520 0.93431 1.02295 1.20269 0.98455 0.96820 0.94003 1.21189 1.01769 0.98995 0.97988 1.22198 1.01684 0.98208 0.96573 1.86855 1.93939 1.16746 1.08010 1.23393 1.00889 0.97780 1.00270 1.20305 0.95869 1.00405 0.95584 0.92948 0.96644 0.96674 0.93479 0.93464 0.91708 0.91748 0.86735 0.89108 0.87468 0.87656 0.89617 0.89272 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.09 5.13 -26.73 -0.14 -2.23 16 11 C -0.10 -1.63 4.97 -27.88 -0.14 -1.76 16 12 C -0.09 -1.36 4.98 -101.11 -0.50 -1.87 16 13 C -0.18 -2.44 9.11 -35.55 -0.32 -2.76 16 14 C -0.04 -0.45 6.76 35.70 0.24 -0.21 16 15 S -0.28 -3.48 22.37 -107.50 -2.40 -5.88 16 16 C -0.08 -0.84 6.61 37.11 0.25 -0.60 16 17 C -0.08 -1.04 5.46 -28.76 -0.16 -1.20 16 18 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 19 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 20 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.94 7.78 -51.93 -0.40 0.54 16 23 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 24 H 0.06 1.09 7.55 -51.93 -0.39 0.70 16 25 H 0.11 1.55 7.40 -52.49 -0.39 1.16 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.12 7.71 -51.93 -0.40 0.72 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -30.05 268.73 -8.89 -38.94 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.93 Total: -3.55 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.32 Total: -23.91 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.40 Total: -5.88 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.05 -8.89 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065713.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.440 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds