Wall clock time and date at job start Sun Mar 29 2020 21:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47448 * 239.99993 * 3 2 1 5 5 H 1.48499 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47081 * 119.99883 * 3 2 1 7 7 C 1.37883 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99540 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47308 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46967 * 179.97438 * 11 10 9 13 13 C 1.27761 * 115.02009 * 95.02291 * 12 11 10 14 14 C 1.50078 * 127.05719 * 181.24531 * 13 12 11 15 15 S 1.81837 * 109.17803 * 341.82915 * 14 13 12 16 16 C 1.82095 * 101.17863 * 44.23000 * 15 14 13 17 17 C 1.48963 * 115.02227 * 274.99705 * 12 11 10 18 18 H 0.96994 * 120.00399 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47435 * 59.99411 * 9 7 2 20 20 H 1.09003 * 109.47037 * 300.00045 * 9 7 2 21 21 H 1.08997 * 109.47312 * 59.99386 * 10 9 7 22 22 H 1.09005 * 109.46632 * 299.99989 * 10 9 7 23 23 H 1.09004 * 109.47368 * 59.99983 * 11 10 9 24 24 H 1.08999 * 109.47036 * 299.99406 * 11 10 9 25 25 H 1.07995 * 116.46822 * 1.26463 * 13 12 11 26 26 H 1.08997 * 109.52753 * 101.70155 * 14 13 12 27 27 H 1.09003 * 109.52023 * 221.83450 * 14 13 12 28 28 H 1.09002 * 109.74592 * 178.57235 * 16 15 14 29 29 H 1.09000 * 109.74801 * 57.89860 * 16 15 14 30 30 H 1.08998 * 108.95704 * 40.08528 * 17 12 11 31 31 H 1.08999 * 108.95958 * 281.43322 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 6 2.7346 -6.6090 1.1536 14 6 3.6873 -7.7254 1.4672 15 16 4.0105 -8.6781 -0.0475 16 6 4.2539 -7.3415 -1.2600 17 6 2.9575 -6.5351 -1.3445 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5572 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8720 -3.6044 0.8904 22 1 2.8719 -3.6043 -0.8895 23 1 0.8533 -5.0452 -0.8886 24 1 0.8540 -5.0446 0.8914 25 1 2.2259 -6.1599 1.9938 26 1 4.6230 -7.3111 1.8428 27 1 3.2485 -8.3775 2.2224 28 1 4.4869 -7.7675 -2.2359 29 1 5.0695 -6.6947 -0.9365 30 1 3.1359 -5.6390 -1.9388 31 1 2.1960 -7.1393 -1.8377 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065713.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:44 Heat of formation + Delta-G solvation = -29.943522 kcal Electronic energy + Delta-G solvation = -11760.229928 eV Core-core repulsion = 9745.245579 eV Total energy + Delta-G solvation = -2014.984349 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.14894 -35.85652 -33.80838 -32.61624 -30.41045 -27.31458 -24.68259 -24.41507 -21.94754 -19.47534 -18.49201 -17.10823 -16.52017 -16.17040 -15.80936 -15.23617 -15.01142 -14.59119 -14.37917 -14.08450 -13.81854 -13.13769 -12.99088 -12.85837 -12.52115 -12.41098 -12.27903 -11.81715 -11.43565 -11.33229 -11.18332 -10.76007 -10.56174 -9.81606 -8.70255 -8.21038 -6.32790 0.78430 1.25244 1.39102 1.42034 1.50152 1.57330 2.40160 3.11751 3.59437 3.79918 4.03607 4.16955 4.30802 4.37344 4.46136 4.55054 4.60112 4.70024 4.83392 4.95156 4.99095 5.04886 5.23484 5.23896 5.45201 5.51795 5.72526 5.84912 6.07749 6.24025 6.84256 7.36695 8.90490 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.064746 B = 0.005365 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.352727 B = 5217.545286 C = 5286.483310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.087 4.087 11 C -0.088 4.088 12 C -0.107 4.107 13 C -0.173 4.173 14 C -0.036 4.036 15 S -0.302 6.302 16 C -0.068 4.068 17 C -0.083 4.083 18 H 0.264 0.736 19 H -0.008 1.008 20 H -0.011 1.011 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -14.520 -0.351 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.015 4.015 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.192 4.192 14 C -0.183 4.183 15 S -0.076 6.076 16 C -0.216 4.216 17 C -0.121 4.121 18 H 0.073 0.927 19 H 0.010 0.990 20 H 0.007 0.993 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.915 -15.539 -0.490 17.445 hybrid contribution -0.156 2.368 0.290 2.390 sum 7.760 -13.171 -0.201 15.288 Atomic orbital electron populations 1.70088 1.07837 1.27871 1.51609 1.25993 0.95765 1.03393 0.94660 0.85507 0.78302 0.78077 0.79218 1.19075 1.20749 1.19207 1.21690 0.93505 0.92511 1.50696 0.92304 1.19040 0.94498 0.93225 0.94712 1.21374 0.97762 0.92989 1.00365 1.20962 0.96750 0.92795 1.02028 1.20199 0.98662 0.96516 0.95383 1.21376 1.01284 0.98971 0.97588 1.22252 1.01745 0.97655 0.96630 1.86958 1.93949 1.17739 1.08924 1.23414 1.00071 0.97169 1.00928 1.20298 0.96755 1.00655 0.94377 0.92739 0.99007 0.99254 0.93578 0.92948 0.91861 0.92267 0.86985 0.87881 0.85824 0.85697 0.89348 0.89454 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.57 5.13 30.59 0.16 -3.42 16 11 C -0.09 -2.95 4.97 29.85 0.15 -2.80 16 12 C -0.11 -2.94 4.98 -13.99 -0.07 -3.01 16 13 C -0.17 -4.39 9.11 28.49 0.26 -4.13 16 14 C -0.04 -0.74 6.76 71.04 0.48 -0.26 16 15 S -0.30 -6.79 22.37 -56.49 -1.26 -8.05 16 16 C -0.07 -1.36 6.61 71.95 0.48 -0.89 16 17 C -0.08 -1.92 5.46 29.28 0.16 -1.76 16 18 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 19 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 20 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.05 2.07 7.78 -2.38 -0.02 2.05 16 23 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 24 H 0.06 2.02 7.55 -2.39 -0.02 2.00 16 25 H 0.11 2.88 7.40 -2.91 -0.02 2.86 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 2.06 7.71 -2.39 -0.02 2.05 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -63.83 268.73 4.58 -59.25 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.08 Total: 5.18 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 2.45 Total: -45.69 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -1.26 Total: -8.05 kcal Total: -63.83 4.58 -59.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065713.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.307 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds