Wall clock time and date at job start Sun Mar 29 2020 21:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47445 * 2 1 4 4 H 1.08996 * 109.46875 * 302.50756 * 3 2 1 5 5 C 1.50696 * 109.46941 * 182.50633 * 3 2 1 6 6 H 1.08006 * 119.99892 * 239.99388 * 5 3 2 7 7 C 1.37882 * 120.00197 * 60.00365 * 5 3 2 8 8 N 1.31516 * 119.99692 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46753 * 89.99811 * 9 7 5 11 11 H 1.48495 * 109.46748 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.46892 * 329.99755 * 9 7 5 13 13 N 1.46897 * 109.46982 * 62.50905 * 3 2 1 14 14 C 1.46897 * 111.00257 * 64.40539 * 13 3 2 15 15 C 1.46898 * 111.00072 * 188.36326 * 13 3 2 16 16 C 1.53784 * 113.61592 * 171.06970 * 15 13 3 17 17 C 1.53783 * 87.08048 * 219.93846 * 16 15 13 18 18 C 1.53002 * 113.61325 * 139.98589 * 17 16 15 19 19 C 1.53775 * 87.17353 * 25.38907 * 17 16 15 20 20 H 1.08993 * 109.47253 * 174.81582 * 1 2 3 21 21 H 1.08996 * 109.46638 * 294.81883 * 1 2 3 22 22 H 1.08997 * 109.46545 * 54.81665 * 1 2 3 23 23 H 1.09000 * 109.46728 * 239.99904 * 2 1 3 24 24 H 1.09003 * 109.47075 * 120.00531 * 2 1 3 25 25 H 0.96998 * 119.99890 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47704 * 183.95286 * 14 13 3 27 27 H 1.08995 * 109.47676 * 303.95699 * 14 13 3 28 28 H 1.09001 * 109.47083 * 63.95833 * 14 13 3 29 29 H 1.08996 * 112.85204 * 302.26648 * 15 13 3 30 30 H 1.08997 * 113.61756 * 105.38699 * 16 15 13 31 31 H 1.08999 * 113.68940 * 334.49414 * 16 15 13 32 32 H 1.09002 * 113.61187 * 270.79874 * 17 16 15 33 33 H 1.08999 * 109.47287 * 61.52722 * 18 17 16 34 34 H 1.09004 * 109.47105 * 301.52354 * 18 17 16 35 35 H 1.08999 * 109.46821 * 181.52922 * 18 17 16 36 36 H 1.09003 * 113.61548 * 89.16425 * 19 17 16 37 37 H 1.09002 * 113.61579 * 220.05546 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6406 1.9691 -0.8666 5 6 3.5458 1.4428 -0.0621 6 1 4.1189 1.8988 0.7317 7 6 4.1918 0.8611 -1.1324 8 7 3.4939 0.3064 -2.0993 9 14 6.0582 0.8621 -1.2097 10 1 6.5816 -0.3600 -0.5483 11 1 6.4947 0.8826 -2.6289 12 1 6.5818 2.0647 -0.5134 13 7 1.6006 2.1172 1.2286 14 6 2.2053 1.4970 2.4150 15 6 1.8996 3.5545 1.1756 16 6 1.2745 4.3566 2.3292 17 6 0.9672 5.4532 1.2957 18 6 -0.4024 6.1082 1.4861 19 6 0.9774 4.3450 0.2297 20 1 -0.3633 -1.0234 -0.0928 21 1 -0.3632 0.4314 0.9327 22 1 -0.3632 0.5921 -0.8399 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.9483 -0.1031 -2.8520 26 1 1.8094 1.9697 3.3139 27 1 1.9685 0.4332 2.4296 28 1 3.2869 1.6281 2.3821 29 1 2.9590 3.7611 1.0239 30 1 1.9940 4.6619 3.0889 31 1 0.3832 3.8933 2.7523 32 1 1.7711 6.1798 1.1779 33 1 -0.4414 6.5918 2.4621 34 1 -1.1806 5.3473 1.4261 35 1 -0.5609 6.8522 0.7054 36 1 0.0047 3.8775 0.0766 37 1 1.4573 4.6409 -0.7032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:56 Heat of formation + Delta-G solvation = 9.004324 kcal Electronic energy + Delta-G solvation = -15002.526456 eV Core-core repulsion = 12780.029898 eV Total energy + Delta-G solvation = -2222.496558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.90498 -35.90864 -32.38071 -31.02574 -28.72282 -26.89580 -25.26131 -24.26796 -22.94317 -20.73009 -18.95437 -18.66371 -16.18107 -15.39404 -14.98109 -14.46540 -13.71418 -13.36390 -13.01173 -12.75364 -12.41813 -12.13317 -11.83971 -11.69040 -11.45694 -11.16209 -10.92024 -10.73006 -10.51897 -10.46022 -10.30125 -9.99669 -9.87950 -9.63219 -9.47997 -9.23417 -8.94198 -8.32410 -7.05489 -5.94750 -4.07594 3.27687 3.34980 3.37581 4.41988 5.01229 5.07877 5.24357 5.29025 5.52003 5.57207 5.80051 5.94056 6.01935 6.18663 6.27006 6.30013 6.39982 6.41903 6.47544 6.49681 6.58764 6.62155 6.72609 6.85389 6.92591 7.09542 7.15958 7.24903 7.43574 7.68376 7.80936 8.04897 8.23389 8.41787 8.55498 9.03366 9.59339 11.04268 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.010249 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.466506 B = 2731.350279 C = 3127.447402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.213 3.787 4 H 0.039 0.961 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.035 3.965 15 C 0.070 3.930 16 C -0.128 4.128 17 C -0.120 4.120 18 C -0.136 4.136 19 C -0.117 4.117 20 H 0.024 0.976 21 H 0.045 0.955 22 H 0.038 0.962 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 6.039 5.813 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.114 4.114 15 C -0.039 4.039 16 C -0.166 4.166 17 C -0.139 4.139 18 C -0.193 4.193 19 C -0.155 4.155 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.109 0.891 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.280 5.882 5.662 9.723 hybrid contribution 2.110 -0.013 -0.215 2.121 sum -3.170 5.869 5.447 8.612 Atomic orbital electron populations 1.21687 0.98911 0.98227 1.00504 1.21608 0.92149 0.99363 1.01889 1.19236 0.92466 0.90791 0.86800 0.94344 1.21754 0.92893 1.37104 1.06164 0.92718 1.24908 0.97793 0.95199 0.95583 1.69878 1.34849 1.37835 1.09890 0.86707 0.86473 0.78318 0.77165 1.20747 1.21223 1.20155 1.62693 1.57280 1.00896 1.04290 1.22114 0.97499 0.99246 0.92509 1.22828 0.97006 0.88962 0.95129 1.23067 1.00688 0.96528 0.96271 1.22378 0.97270 0.95826 0.98433 1.21673 0.96813 1.00247 1.00586 1.22972 1.00561 0.95363 0.96579 0.95727 0.93563 0.94246 0.89140 0.94904 0.92982 0.94325 0.92253 0.95501 0.91978 0.92920 0.89987 0.90120 0.93260 0.92616 0.93228 0.89927 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.71 37.16 0.36 -2.45 16 2 C -0.11 -2.68 5.07 -26.73 -0.14 -2.81 16 3 C 0.21 5.27 1.69 -68.87 -0.12 5.16 16 4 H 0.04 1.06 7.58 -51.93 -0.39 0.66 16 5 C -0.54 -14.53 7.13 -34.44 -0.25 -14.77 16 6 H 0.05 1.49 5.93 -52.48 -0.31 1.18 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.07 11.30 55.43 0.63 -24.44 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -11.22 4.11 -227.22 -0.93 -12.15 16 14 C 0.04 0.70 8.77 60.06 0.53 1.23 16 15 C 0.07 1.36 2.88 -66.81 -0.19 1.17 16 16 C -0.13 -2.02 6.48 -25.92 -0.17 -2.19 16 17 C -0.12 -1.76 4.35 -89.81 -0.39 -2.15 16 18 C -0.14 -1.68 9.70 37.16 0.36 -1.32 16 19 C -0.12 -2.06 6.80 -25.83 -0.18 -2.24 16 20 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.91 7.83 -51.93 -0.41 0.51 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16 24 H 0.03 0.78 6.31 -51.93 -0.33 0.45 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.04 0.67 7.48 -51.93 -0.39 0.29 16 27 H 0.06 1.20 6.19 -51.93 -0.32 0.88 16 28 H 0.03 0.57 6.36 -51.93 -0.33 0.24 16 29 H 0.06 1.35 7.25 -51.93 -0.38 0.98 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.70 7.98 -51.93 -0.41 0.28 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.49 7.99 -51.93 -0.41 1.07 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -27.20 284.44 -7.82 -35.03 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.51 Total: -0.38 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.27 Total: -18.63 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.31 Total: -36.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.20 -7.82 -35.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.031 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds