Wall clock time and date at job start Sun Mar 29 2020 21:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 H 1.08998 * 109.47365 * 57.18873 * 3 2 1 5 5 C 1.50701 * 109.47156 * 177.18755 * 3 2 1 6 6 H 1.08004 * 120.00044 * 117.79756 * 5 3 2 7 7 C 1.37873 * 120.00174 * 297.80501 * 5 3 2 8 8 N 1.31518 * 120.00188 * 348.84325 * 7 5 3 9 9 Si 1.86806 * 120.00168 * 168.57599 * 7 5 3 10 10 H 1.48499 * 109.46854 * 180.27073 * 9 7 5 11 11 H 1.48500 * 109.47141 * 300.27077 * 9 7 5 12 12 H 1.48496 * 109.47154 * 60.27329 * 9 7 5 13 13 N 1.46895 * 109.47337 * 297.18810 * 3 2 1 14 14 C 1.46900 * 111.00142 * 171.86305 * 13 3 2 15 15 C 1.46892 * 111.00365 * 295.81951 * 13 3 2 16 16 C 1.53781 * 113.61725 * 266.29222 * 15 13 3 17 17 C 1.53955 * 87.02360 * 220.04477 * 16 15 13 18 18 C 1.52996 * 113.53555 * 270.81214 * 17 16 15 19 19 C 1.53783 * 113.61899 * 168.68109 * 15 13 3 20 20 H 1.09007 * 109.47284 * 305.13036 * 1 2 3 21 21 H 1.09003 * 109.47493 * 65.12602 * 1 2 3 22 22 H 1.08992 * 109.47266 * 185.12811 * 1 2 3 23 23 H 1.08999 * 109.47249 * 240.00408 * 2 1 3 24 24 H 1.08994 * 109.47457 * 119.99773 * 2 1 3 25 25 H 0.97001 * 119.99655 * 357.05010 * 8 7 5 26 26 H 1.09001 * 109.46846 * 53.52456 * 14 13 3 27 27 H 1.09003 * 109.47386 * 173.52238 * 14 13 3 28 28 H 1.09000 * 109.47449 * 293.52429 * 14 13 3 29 29 H 1.09002 * 112.84952 * 37.48111 * 15 13 3 30 30 H 1.09000 * 113.61098 * 334.56020 * 16 15 13 31 31 H 1.09001 * 113.61873 * 105.46277 * 16 15 13 32 32 H 1.08999 * 113.75072 * 139.93769 * 17 16 15 33 33 H 1.09000 * 109.47225 * 157.49277 * 18 17 16 34 34 H 1.09002 * 109.46796 * 277.48679 * 18 17 16 35 35 H 1.08996 * 109.47208 * 37.49218 * 18 17 16 36 36 H 1.09005 * 113.61220 * 254.53043 * 19 15 13 37 37 H 1.08997 * 113.61115 * 25.43402 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6360 1.9707 0.8637 5 6 3.5453 1.4432 0.0697 6 1 4.1232 1.8660 -0.7388 7 6 4.1849 0.9039 1.1656 8 7 3.4957 0.5903 2.2409 9 14 6.0294 0.6115 1.1203 10 1 6.4689 0.0221 2.4105 11 1 6.3556 -0.3224 0.0128 12 1 6.7300 1.9025 0.9018 13 7 1.6066 2.1152 -1.2319 14 6 1.9100 3.5516 -1.1821 15 6 2.2130 1.4897 -2.4146 16 6 3.5172 2.1662 -2.8688 17 6 3.0251 1.9632 -4.3134 18 6 3.4478 0.6238 -4.9202 19 6 1.5968 1.9579 -3.7435 20 1 -0.3634 0.5914 0.8405 21 1 -0.3634 0.4323 -0.9323 22 1 -0.3633 -1.0235 0.0918 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.5448 0.7778 2.2792 26 1 2.9662 3.6920 -0.9522 27 1 1.6852 4.0042 -2.1480 28 1 1.3039 4.0245 -0.4094 29 1 2.2908 0.4060 -2.3272 30 1 3.5908 3.2135 -2.5758 31 1 4.4130 1.5941 -2.6272 32 1 3.2301 2.8088 -4.9699 33 1 2.7729 0.3655 -5.7363 34 1 4.4657 0.7029 -5.3018 35 1 3.4057 -0.1512 -4.1549 36 1 0.9444 1.2178 -4.2070 37 1 1.1444 2.9481 -3.6900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:57 Heat of formation + Delta-G solvation = 13.768260 kcal Electronic energy + Delta-G solvation = -15317.007680 eV Core-core repulsion = 13094.717702 eV Total energy + Delta-G solvation = -2222.289978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47108 -35.82005 -32.55355 -31.22501 -28.26747 -26.50938 -25.44713 -24.45693 -22.96274 -21.58125 -19.44897 -17.59835 -16.93907 -15.38841 -15.29105 -14.00965 -13.74853 -13.36513 -13.06905 -12.83261 -12.45505 -12.16892 -12.10782 -11.55837 -11.55193 -11.27286 -11.01553 -10.75411 -10.55012 -10.44990 -10.27443 -10.13650 -9.90350 -9.75638 -9.53042 -9.24798 -8.74934 -8.25063 -7.02028 -6.28470 -4.03401 3.41911 3.43776 3.61759 4.53939 4.97756 5.07084 5.14958 5.36178 5.36916 5.72993 5.81078 6.00793 6.03051 6.07396 6.10572 6.23693 6.26122 6.30687 6.32933 6.45211 6.48952 6.52295 6.67974 6.75420 6.78732 6.90369 6.94951 7.03602 7.17220 7.43724 7.50535 8.01175 8.24233 8.36558 8.62035 8.87185 9.68059 11.03400 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.013046 C = 0.010402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.458470 B = 2145.773732 C = 2691.049714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.200 3.800 4 H 0.026 0.974 5 C -0.626 4.626 6 H 0.062 0.938 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.055 2.945 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.526 5.526 14 C 0.033 3.967 15 C 0.089 3.911 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.131 4.131 19 C -0.134 4.134 20 H 0.040 0.960 21 H 0.052 0.948 22 H 0.028 0.972 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.272 0.728 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 1.561 -9.907 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.093 3.907 4 H 0.044 0.956 5 C -0.665 4.665 6 H 0.080 0.920 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.884 3.116 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.247 5.247 14 C -0.115 4.115 15 C -0.021 4.021 16 C -0.197 4.197 17 C -0.141 4.141 18 C -0.189 4.189 19 C -0.172 4.172 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.200 0.901 -9.025 9.149 hybrid contribution -0.283 0.733 -0.787 1.111 sum -1.483 1.634 -9.811 10.056 Atomic orbital electron populations 1.21699 0.98165 0.98687 1.01058 1.21652 0.92986 0.99540 1.01031 1.19366 0.93902 0.90269 0.87114 0.95640 1.22716 0.92273 1.43999 1.07539 0.91980 1.25604 1.06032 0.93918 0.92254 1.70787 1.10451 1.45234 1.27924 0.83752 0.75438 0.76451 0.75976 1.20890 1.21531 1.21696 1.62324 1.56934 1.01931 1.03558 1.22205 0.99839 0.90187 0.99316 1.22840 0.91421 0.98867 0.88928 1.23716 1.00095 1.01760 0.94164 1.22312 0.97584 0.97438 0.96759 1.21563 1.00338 0.96650 1.00300 1.23198 0.95357 1.01163 0.97482 0.94125 0.92911 0.95279 0.93832 0.91696 0.91710 0.94391 0.93612 0.93282 0.88609 0.90110 0.91572 0.91749 0.93050 0.93026 0.92277 0.92353 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.71 37.16 0.36 -2.40 16 2 C -0.11 -2.63 5.00 -26.73 -0.13 -2.76 16 3 C 0.20 4.87 1.38 -68.87 -0.09 4.78 16 4 H 0.03 0.69 7.47 -51.93 -0.39 0.31 16 5 C -0.63 -16.58 7.02 -34.44 -0.24 -16.82 16 6 H 0.06 1.63 4.35 -52.48 -0.23 1.40 16 7 C 0.03 0.76 5.14 -17.82 -0.09 0.66 16 8 N -0.91 -26.60 12.79 55.43 0.71 -25.89 16 9 Si 1.05 24.90 29.92 -169.99 -5.09 19.81 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -11.07 4.29 -227.32 -0.97 -12.05 16 14 C 0.03 0.65 8.05 60.06 0.48 1.13 16 15 C 0.09 1.71 2.79 -66.90 -0.19 1.53 16 16 C -0.16 -2.90 4.84 -25.83 -0.12 -3.02 16 17 C -0.12 -1.84 4.56 -89.71 -0.41 -2.25 16 18 C -0.13 -1.80 9.59 37.16 0.36 -1.44 16 19 C -0.13 -2.14 7.16 -25.91 -0.19 -2.33 16 20 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 21 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.04 1.00 6.14 -51.93 -0.32 0.68 16 24 H 0.06 1.66 6.27 -51.93 -0.33 1.33 16 25 H 0.27 7.95 6.28 -40.82 -0.26 7.70 16 26 H 0.04 0.81 5.70 -51.93 -0.30 0.51 16 27 H 0.05 0.78 6.24 -51.93 -0.32 0.46 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.99 5.50 -51.93 -0.29 1.71 16 30 H 0.08 1.50 5.55 -51.93 -0.29 1.21 16 31 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.88 7.34 -51.93 -0.38 0.49 16 36 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 1.19 6.75 -51.93 -0.35 0.84 16 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -27.69 273.29 -7.48 -35.17 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.98 Total: 1.76 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.27 Total: -22.92 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.27 Total: -37.94 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.69 -7.48 -35.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.940 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds