Wall clock time and date at job start Sun Mar 29 2020 21:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 H 1.08998 * 109.47365 * 57.18873 * 3 2 1 5 5 C 1.50701 * 109.47156 * 177.18755 * 3 2 1 6 6 H 1.08004 * 120.00044 * 117.79756 * 5 3 2 7 7 C 1.37873 * 120.00174 * 297.80501 * 5 3 2 8 8 N 1.31518 * 120.00188 * 348.84325 * 7 5 3 9 9 Si 1.86806 * 120.00168 * 168.57599 * 7 5 3 10 10 H 1.48499 * 109.46854 * 180.27073 * 9 7 5 11 11 H 1.48500 * 109.47141 * 300.27077 * 9 7 5 12 12 H 1.48496 * 109.47154 * 60.27329 * 9 7 5 13 13 N 1.46895 * 109.47337 * 297.18810 * 3 2 1 14 14 C 1.46900 * 111.00142 * 171.86305 * 13 3 2 15 15 C 1.46892 * 111.00365 * 295.81951 * 13 3 2 16 16 C 1.53781 * 113.61725 * 266.29222 * 15 13 3 17 17 C 1.53955 * 87.02360 * 220.04477 * 16 15 13 18 18 C 1.52996 * 113.53555 * 270.81214 * 17 16 15 19 19 C 1.53783 * 113.61899 * 168.68109 * 15 13 3 20 20 H 1.09007 * 109.47284 * 305.13036 * 1 2 3 21 21 H 1.09003 * 109.47493 * 65.12602 * 1 2 3 22 22 H 1.08992 * 109.47266 * 185.12811 * 1 2 3 23 23 H 1.08999 * 109.47249 * 240.00408 * 2 1 3 24 24 H 1.08994 * 109.47457 * 119.99773 * 2 1 3 25 25 H 0.97001 * 119.99655 * 357.05010 * 8 7 5 26 26 H 1.09001 * 109.46846 * 53.52456 * 14 13 3 27 27 H 1.09003 * 109.47386 * 173.52238 * 14 13 3 28 28 H 1.09000 * 109.47449 * 293.52429 * 14 13 3 29 29 H 1.09002 * 112.84952 * 37.48111 * 15 13 3 30 30 H 1.09000 * 113.61098 * 334.56020 * 16 15 13 31 31 H 1.09001 * 113.61873 * 105.46277 * 16 15 13 32 32 H 1.08999 * 113.75072 * 139.93769 * 17 16 15 33 33 H 1.09000 * 109.47225 * 157.49277 * 18 17 16 34 34 H 1.09002 * 109.46796 * 277.48679 * 18 17 16 35 35 H 1.08996 * 109.47208 * 37.49218 * 18 17 16 36 36 H 1.09005 * 113.61220 * 254.53043 * 19 15 13 37 37 H 1.08997 * 113.61115 * 25.43402 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6360 1.9707 0.8637 5 6 3.5453 1.4432 0.0697 6 1 4.1232 1.8660 -0.7388 7 6 4.1849 0.9039 1.1656 8 7 3.4957 0.5903 2.2409 9 14 6.0294 0.6115 1.1203 10 1 6.4689 0.0221 2.4105 11 1 6.3556 -0.3224 0.0128 12 1 6.7300 1.9025 0.9018 13 7 1.6066 2.1152 -1.2319 14 6 1.9100 3.5516 -1.1821 15 6 2.2130 1.4897 -2.4146 16 6 3.5172 2.1662 -2.8688 17 6 3.0251 1.9632 -4.3134 18 6 3.4478 0.6238 -4.9202 19 6 1.5968 1.9579 -3.7435 20 1 -0.3634 0.5914 0.8405 21 1 -0.3634 0.4323 -0.9323 22 1 -0.3633 -1.0235 0.0918 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.5448 0.7778 2.2792 26 1 2.9662 3.6920 -0.9522 27 1 1.6852 4.0042 -2.1480 28 1 1.3039 4.0245 -0.4094 29 1 2.2908 0.4060 -2.3272 30 1 3.5908 3.2135 -2.5758 31 1 4.4130 1.5941 -2.6272 32 1 3.2301 2.8088 -4.9699 33 1 2.7729 0.3655 -5.7363 34 1 4.4657 0.7029 -5.3018 35 1 3.4057 -0.1512 -4.1549 36 1 0.9444 1.2178 -4.2070 37 1 1.1444 2.9481 -3.6900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:57 Heat of formation + Delta-G solvation = -2.132753 kcal Electronic energy + Delta-G solvation = -15317.697200 eV Core-core repulsion = 13094.717702 eV Total energy + Delta-G solvation = -2222.979498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97622 -37.54127 -34.42520 -33.05507 -29.54448 -28.34441 -26.99879 -26.01939 -24.80095 -23.18253 -21.20501 -19.03401 -18.87345 -17.08975 -16.86851 -15.67864 -15.64492 -14.92830 -14.60983 -14.29758 -14.00416 -13.71827 -13.65240 -13.21393 -13.05038 -12.94343 -12.66585 -12.51959 -12.30109 -12.01327 -11.91750 -11.74477 -11.59709 -11.31467 -11.27362 -10.74086 -10.59363 -10.34456 -8.84486 -8.41761 -6.22313 1.49140 1.55053 1.73684 2.56979 3.22930 3.39285 3.78854 3.81153 4.01729 4.29549 4.37532 4.50427 4.52193 4.62988 4.71715 4.75188 4.82495 4.85997 4.95728 5.01335 5.04444 5.06039 5.13590 5.20217 5.25145 5.31621 5.33543 5.44842 5.56089 5.60689 5.69521 6.05088 6.23001 6.60757 6.64542 6.69562 7.56703 8.83482 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.013046 C = 0.010402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.458470 B = 2145.773732 C = 2691.049714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.009 1.009 5 C -0.625 4.625 6 H 0.063 0.937 7 C -0.023 4.023 8 N -0.935 5.935 9 Si 1.097 2.903 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.276 1.276 13 N -0.525 5.525 14 C 0.037 3.963 15 C 0.075 3.925 16 C -0.164 4.164 17 C -0.105 4.105 18 C -0.131 4.131 19 C -0.119 4.119 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 1.862 -12.278 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.097 3.903 4 H 0.009 0.991 5 C -0.663 4.663 6 H 0.081 0.919 7 C -0.222 4.222 8 N -0.573 5.573 9 Si 0.921 3.079 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.111 4.111 15 C -0.034 4.034 16 C -0.203 4.203 17 C -0.124 4.124 18 C -0.188 4.188 19 C -0.157 4.157 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.331 1.212 -11.423 11.564 hybrid contribution -0.266 0.669 -0.076 0.724 sum -1.597 1.881 -11.500 11.761 Atomic orbital electron populations 1.21565 0.95421 1.00079 1.01299 1.21488 0.95385 0.98232 0.99378 1.19178 0.92627 0.90900 0.87639 0.99085 1.23040 0.93714 1.42625 1.06970 0.91874 1.26812 1.09406 0.93875 0.92141 1.70893 1.09912 1.47379 1.29086 0.83188 0.71493 0.77175 0.76067 1.21402 1.20046 1.20214 1.62322 1.56981 1.02496 1.02820 1.22212 0.98405 0.89539 1.00974 1.22964 0.93018 0.97852 0.89575 1.23689 0.98589 1.00901 0.97087 1.22266 0.96146 0.99009 0.94981 1.21578 1.01645 0.95231 1.00380 1.23117 0.96126 1.01743 0.94726 0.94619 0.91948 0.93165 0.93928 0.94745 0.93050 0.96520 0.90506 0.93511 0.90539 0.90489 0.93866 0.89552 0.90820 0.91966 0.94062 0.90920 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.71 71.98 0.70 -4.24 16 2 C -0.11 -5.00 5.00 30.59 0.15 -4.85 16 3 C 0.20 10.14 1.38 44.17 0.06 10.20 16 4 H -0.01 -0.49 7.47 -2.39 -0.02 -0.51 16 5 C -0.62 -33.66 7.02 25.60 0.18 -33.48 16 6 H 0.06 3.34 4.35 -2.91 -0.01 3.33 16 7 C -0.02 -1.28 5.14 84.65 0.43 -0.85 16 8 N -0.94 -56.46 12.79 21.45 0.27 -56.19 16 9 Si 1.10 50.60 29.92 68.60 2.05 52.65 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.52 -21.82 4.29 -873.12 -3.74 -25.56 16 14 C 0.04 1.43 8.05 127.69 1.03 2.46 16 15 C 0.08 2.79 2.79 45.44 0.13 2.92 16 16 C -0.16 -5.77 4.84 31.18 0.15 -5.62 16 17 C -0.11 -2.84 4.56 -10.21 -0.05 -2.89 16 18 C -0.13 -3.20 9.59 71.98 0.69 -2.51 16 19 C -0.12 -3.42 7.16 31.12 0.22 -3.20 16 20 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 21 H 0.06 2.31 7.84 -2.39 -0.02 2.29 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.97 6.14 -2.39 -0.01 1.96 16 24 H 0.03 1.81 6.27 -2.39 -0.01 1.79 16 25 H 0.26 15.87 6.28 -92.71 -0.58 15.29 16 26 H 0.02 0.70 5.70 -2.39 -0.01 0.69 16 27 H 0.08 2.45 6.24 -2.39 -0.01 2.43 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 3.15 5.50 -2.39 -0.01 3.14 16 30 H 0.08 2.75 5.55 -2.39 -0.01 2.74 16 31 H 0.04 1.69 7.36 -2.39 -0.02 1.68 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.15 7.34 -2.39 -0.02 1.13 16 36 H 0.07 1.91 8.10 -2.38 -0.02 1.89 16 37 H 0.08 2.29 6.75 -2.39 -0.02 2.28 16 Total: -1.00 -60.16 273.29 3.50 -56.66 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.22 Total: 14.47 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 3.70 Total: -42.04 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.47 Total: -81.75 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.05 Total: 52.65 kcal Total: -60.16 3.50 -56.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.529 kcal (2) G-P(sol) polarization free energy of solvation -60.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds