Wall clock time and date at job start Sun Mar 29 2020 21:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47111 * 2 1 4 4 H 1.08993 * 109.46785 * 304.99604 * 3 2 1 5 5 C 1.53002 * 109.47020 * 184.99808 * 3 2 1 6 6 N 1.46898 * 109.47121 * 64.99414 * 3 2 1 7 7 C 1.46902 * 111.00006 * 227.87195 * 6 3 2 8 8 H 1.09007 * 109.40877 * 33.83392 * 7 6 3 9 9 C 1.52962 * 109.41295 * 153.68844 * 7 6 3 10 10 C 1.53225 * 109.40369 * 183.70976 * 9 7 6 11 11 C 1.51271 * 108.53519 * 305.37046 * 10 9 7 12 12 C 1.37881 * 120.85000 * 231.37309 * 11 10 9 13 13 N 1.31515 * 119.99882 * 0.02562 * 12 11 10 14 14 Si 1.86798 * 119.99917 * 180.02562 * 12 11 10 15 15 H 1.48503 * 109.47389 * 89.99674 * 14 12 11 16 16 H 1.48495 * 109.47104 * 209.99736 * 14 12 11 17 17 H 1.48497 * 109.47294 * 329.99951 * 14 12 11 18 18 C 1.51265 * 118.30008 * 51.34921 * 11 10 9 19 19 C 1.52957 * 109.41693 * 274.04514 * 7 6 3 20 20 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47175 * 300.00541 * 1 2 3 22 22 H 1.09005 * 109.46733 * 60.00430 * 1 2 3 23 23 H 1.08996 * 109.47917 * 239.99502 * 2 1 3 24 24 H 1.09002 * 109.47132 * 119.99244 * 2 1 3 25 25 H 1.08994 * 109.47459 * 64.26684 * 5 3 2 26 26 H 1.09004 * 109.47156 * 304.26537 * 5 3 2 27 27 H 1.09003 * 109.47175 * 184.26936 * 5 3 2 28 28 H 1.00907 * 110.99574 * 103.92594 * 6 3 2 29 29 H 1.09005 * 109.48265 * 303.69157 * 9 7 6 30 30 H 1.08999 * 109.47666 * 63.72490 * 9 7 6 31 31 H 1.09000 * 109.62778 * 65.08825 * 10 9 7 32 32 H 1.09002 * 109.62481 * 185.66386 * 10 9 7 33 33 H 0.96999 * 119.99389 * 180.02562 * 13 12 11 34 34 H 1.09008 * 109.62724 * 68.36545 * 18 11 10 35 35 H 1.08997 * 109.63053 * 188.93300 * 18 11 10 36 36 H 1.09000 * 109.47845 * 296.27355 * 19 7 6 37 37 H 1.08998 * 109.48176 * 56.31317 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6512 2.0994 1.2551 7 6 1.0542 3.4165 0.9971 8 1 0.4979 3.3848 0.0602 9 6 0.1042 3.7769 2.1405 10 6 -0.5884 5.1072 1.8268 11 6 0.4733 6.1478 1.5470 12 6 0.4626 7.3621 2.2001 13 7 -0.4785 7.6275 3.0795 14 14 1.7850 8.6302 1.8358 15 1 1.3380 9.5059 0.7229 16 1 2.0277 9.4542 3.0471 17 1 3.0406 7.9387 1.4478 18 6 1.5473 5.8220 0.5329 19 6 2.1624 4.4657 0.8934 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.8504 1.0257 -1.0906 26 1 3.9960 0.8418 0.6738 27 1 3.9345 2.4670 -0.0495 28 1 2.4382 2.1757 1.8821 29 1 -0.6459 2.9936 2.2506 30 1 0.6702 3.8713 3.0672 31 1 -1.2263 4.9903 0.9507 32 1 -1.1890 5.4178 2.6817 33 1 -0.4862 8.4819 3.5387 34 1 1.1071 5.7711 -0.4630 35 1 2.3187 6.5916 0.5563 36 1 2.6796 4.5438 1.8497 37 1 2.8711 4.1706 0.1196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257428983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:10 Heat of formation + Delta-G solvation = -32.930221 kcal Electronic energy + Delta-G solvation = -14802.581953 eV Core-core repulsion = 12578.266977 eV Total energy + Delta-G solvation = -2224.314976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.17683 -35.60733 -32.61692 -30.80818 -29.74244 -28.92402 -26.14237 -23.33960 -21.71216 -21.17616 -20.43108 -19.07235 -16.14444 -15.37869 -14.64107 -14.32362 -14.01312 -13.37133 -13.02361 -12.87658 -12.72731 -12.48022 -12.13973 -12.03593 -11.52289 -11.30302 -11.05120 -10.85174 -10.76706 -10.61609 -10.53868 -10.19689 -10.11208 -9.75128 -9.49362 -8.81102 -8.64642 -8.44126 -7.71050 -6.05529 -3.95777 3.28049 3.36320 3.36660 4.40707 4.63909 5.01938 5.21112 5.27720 5.45139 5.56792 5.74484 5.77586 5.85601 5.90369 6.03244 6.17146 6.18969 6.27898 6.35515 6.42985 6.55448 6.64833 6.79766 6.87522 6.94850 7.02238 7.10438 7.26401 7.43942 7.67102 7.74336 7.79457 7.93710 8.01673 8.45955 9.02877 9.59000 11.04098 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046903 B = 0.008356 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.830361 B = 3350.048617 C = 3772.003146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.080 3.920 4 H 0.065 0.935 5 C -0.175 4.175 6 N -0.684 5.684 7 C 0.101 3.899 8 H 0.062 0.938 9 C -0.093 4.093 10 C 0.008 3.992 11 C -0.484 4.484 12 C 0.074 3.926 13 N -0.891 5.891 14 Si 0.885 3.115 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.266 1.266 18 C -0.018 4.018 19 C -0.133 4.133 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.335 0.665 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.001 0.999 32 H 0.056 0.944 33 H 0.263 0.737 34 H 0.014 0.986 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -10.585 -4.974 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.030 4.030 4 H 0.083 0.917 5 C -0.233 4.233 6 N -0.314 5.314 7 C -0.008 4.008 8 H 0.081 0.919 9 C -0.131 4.131 10 C -0.030 4.030 11 C -0.503 4.503 12 C -0.128 4.128 13 N -0.529 5.529 14 Si 0.714 3.286 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.191 1.191 18 C -0.056 4.056 19 C -0.172 4.172 20 H 0.060 0.940 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.595 -10.779 -4.800 12.663 hybrid contribution 1.594 1.311 -0.391 2.100 sum 6.189 -9.469 -5.191 12.446 Atomic orbital electron populations 1.21656 0.95722 1.00254 1.02537 1.21509 0.96445 0.95945 1.00600 1.21638 0.93058 0.95347 0.92988 0.91657 1.22458 0.97252 1.01975 1.01638 1.60790 1.34945 1.22964 1.12669 1.21599 0.95049 0.85054 0.99079 0.91933 1.21570 0.96906 0.98100 0.96535 1.19398 0.95274 0.90844 0.97451 1.20072 1.09526 0.99629 1.21076 1.24852 0.95773 0.97554 0.94651 1.69844 1.33305 1.23429 1.26360 0.86705 0.82908 0.81338 0.77641 1.20503 1.21679 1.19141 1.19775 0.96064 0.93044 0.96762 1.22266 0.97036 0.98682 0.99265 0.94011 0.91186 0.93676 0.93041 0.92232 0.92733 0.92573 0.92407 0.84724 0.94655 0.93554 0.98030 0.92517 0.92697 0.96763 0.95038 0.93086 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.80 37.16 0.36 -1.51 16 2 C -0.11 -1.33 5.61 -26.73 -0.15 -1.48 16 3 C 0.08 1.11 2.60 -67.71 -0.18 0.94 16 4 H 0.07 0.99 7.14 -51.93 -0.37 0.62 16 5 C -0.17 -2.13 9.05 37.16 0.34 -1.79 16 6 N -0.68 -11.02 5.59 -99.78 -0.56 -11.58 16 7 C 0.10 1.95 2.30 -67.75 -0.16 1.79 16 8 H 0.06 1.26 7.35 -51.92 -0.38 0.88 16 9 C -0.09 -2.02 5.54 -26.63 -0.15 -2.17 16 10 C 0.01 0.21 5.97 -27.49 -0.16 0.04 16 11 C -0.48 -12.93 5.51 -98.92 -0.55 -13.47 16 12 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 13 N -0.89 -26.06 12.73 55.43 0.71 -25.35 16 14 Si 0.89 21.35 27.53 -169.99 -4.68 16.67 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.21 6.10 56.52 0.34 -5.86 16 18 C -0.02 -0.43 5.59 -27.49 -0.15 -0.59 16 19 C -0.13 -2.70 5.19 -26.64 -0.14 -2.84 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.76 6.69 -51.93 -0.35 0.41 16 28 H 0.33 5.25 7.91 -39.29 -0.31 4.94 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 35 H 0.03 0.74 4.59 -51.93 -0.24 0.50 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.51 6.59 -51.93 -0.34 0.17 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -27.49 281.76 -7.92 -35.40 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.60 Total: -0.26 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.03 Total: -19.13 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.15 Total: -36.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.68 Total: 16.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.49 -7.92 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257428983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.475 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds