Wall clock time and date at job start Sun Mar 29 2020 21:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47111 * 2 1 4 4 H 1.08993 * 109.46785 * 304.99604 * 3 2 1 5 5 C 1.53002 * 109.47020 * 184.99808 * 3 2 1 6 6 N 1.46898 * 109.47121 * 64.99414 * 3 2 1 7 7 C 1.46902 * 111.00006 * 227.87195 * 6 3 2 8 8 H 1.09007 * 109.40877 * 33.83392 * 7 6 3 9 9 C 1.52962 * 109.41295 * 153.68844 * 7 6 3 10 10 C 1.53225 * 109.40369 * 183.70976 * 9 7 6 11 11 C 1.51271 * 108.53519 * 305.37046 * 10 9 7 12 12 C 1.37881 * 120.85000 * 231.37309 * 11 10 9 13 13 N 1.31515 * 119.99882 * 0.02562 * 12 11 10 14 14 Si 1.86798 * 119.99917 * 180.02562 * 12 11 10 15 15 H 1.48503 * 109.47389 * 89.99674 * 14 12 11 16 16 H 1.48495 * 109.47104 * 209.99736 * 14 12 11 17 17 H 1.48497 * 109.47294 * 329.99951 * 14 12 11 18 18 C 1.51265 * 118.30008 * 51.34921 * 11 10 9 19 19 C 1.52957 * 109.41693 * 274.04514 * 7 6 3 20 20 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47175 * 300.00541 * 1 2 3 22 22 H 1.09005 * 109.46733 * 60.00430 * 1 2 3 23 23 H 1.08996 * 109.47917 * 239.99502 * 2 1 3 24 24 H 1.09002 * 109.47132 * 119.99244 * 2 1 3 25 25 H 1.08994 * 109.47459 * 64.26684 * 5 3 2 26 26 H 1.09004 * 109.47156 * 304.26537 * 5 3 2 27 27 H 1.09003 * 109.47175 * 184.26936 * 5 3 2 28 28 H 1.00907 * 110.99574 * 103.92594 * 6 3 2 29 29 H 1.09005 * 109.48265 * 303.69157 * 9 7 6 30 30 H 1.08999 * 109.47666 * 63.72490 * 9 7 6 31 31 H 1.09000 * 109.62778 * 65.08825 * 10 9 7 32 32 H 1.09002 * 109.62481 * 185.66386 * 10 9 7 33 33 H 0.96999 * 119.99389 * 180.02562 * 13 12 11 34 34 H 1.09008 * 109.62724 * 68.36545 * 18 11 10 35 35 H 1.08997 * 109.63053 * 188.93300 * 18 11 10 36 36 H 1.09000 * 109.47845 * 296.27355 * 19 7 6 37 37 H 1.08998 * 109.48176 * 56.31317 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6512 2.0994 1.2551 7 6 1.0542 3.4165 0.9971 8 1 0.4979 3.3848 0.0602 9 6 0.1042 3.7769 2.1405 10 6 -0.5884 5.1072 1.8268 11 6 0.4733 6.1478 1.5470 12 6 0.4626 7.3621 2.2001 13 7 -0.4785 7.6275 3.0795 14 14 1.7850 8.6302 1.8358 15 1 1.3380 9.5059 0.7229 16 1 2.0277 9.4542 3.0471 17 1 3.0406 7.9387 1.4478 18 6 1.5473 5.8220 0.5329 19 6 2.1624 4.4657 0.8934 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.8504 1.0257 -1.0906 26 1 3.9960 0.8418 0.6738 27 1 3.9345 2.4670 -0.0495 28 1 2.4382 2.1757 1.8821 29 1 -0.6459 2.9936 2.2506 30 1 0.6702 3.8713 3.0672 31 1 -1.2263 4.9903 0.9507 32 1 -1.1890 5.4178 2.6817 33 1 -0.4862 8.4819 3.5387 34 1 1.1071 5.7711 -0.4630 35 1 2.3187 6.5916 0.5563 36 1 2.6796 4.5438 1.8497 37 1 2.8711 4.1706 0.1196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257428983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:09 Heat of formation + Delta-G solvation = -49.066436 kcal Electronic energy + Delta-G solvation = -14803.281672 eV Core-core repulsion = 12578.266977 eV Total energy + Delta-G solvation = -2225.014695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65001 -37.12337 -34.39084 -32.28375 -31.50838 -30.28725 -27.81111 -24.41302 -23.56498 -23.01552 -21.65860 -20.70716 -18.05990 -16.63744 -16.43945 -15.95013 -15.19798 -14.82800 -14.63642 -14.37359 -14.15429 -13.98673 -13.79431 -13.59805 -12.91420 -12.73981 -12.60237 -12.53535 -12.37697 -11.90902 -11.82370 -11.68340 -11.57304 -11.47170 -11.33970 -10.72056 -10.53721 -10.49413 -9.08478 -8.15787 -6.09998 1.37445 1.39117 1.47833 2.40305 3.08331 3.39609 3.96770 4.14170 4.24851 4.33054 4.42772 4.58739 4.62306 4.73793 4.79645 4.85176 4.95993 5.03787 5.09211 5.10913 5.17998 5.21413 5.24350 5.25026 5.37824 5.44192 5.49130 5.59290 5.62157 5.65058 5.80000 5.87239 6.35947 6.38579 6.69627 6.97234 7.47468 8.95347 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046903 B = 0.008356 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.830361 B = 3350.048617 C = 3772.003146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.077 3.923 4 H 0.055 0.945 5 C -0.169 4.169 6 N -0.682 5.682 7 C 0.115 3.885 8 H 0.056 0.944 9 C -0.082 4.082 10 C 0.005 3.995 11 C -0.496 4.496 12 C 0.016 3.984 13 N -0.935 5.935 14 Si 0.942 3.058 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.249 1.249 18 C -0.022 4.022 19 C -0.125 4.125 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.340 0.660 29 H 0.043 0.957 30 H 0.033 0.967 31 H -0.005 1.005 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.017 0.983 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -12.006 -6.284 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.033 4.033 4 H 0.073 0.927 5 C -0.227 4.227 6 N -0.312 5.312 7 C 0.006 3.994 8 H 0.074 0.926 9 C -0.120 4.120 10 C -0.033 4.033 11 C -0.515 4.515 12 C -0.181 4.181 13 N -0.575 5.575 14 Si 0.768 3.232 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.173 1.173 18 C -0.060 4.060 19 C -0.165 4.165 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.014 0.986 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.627 -12.225 -6.128 15.196 hybrid contribution 0.890 1.681 -0.007 1.902 sum 7.517 -10.544 -6.135 14.329 Atomic orbital electron populations 1.21639 0.96408 1.00914 1.01164 1.21485 0.95764 0.94988 1.01779 1.21731 0.94521 0.95776 0.91223 0.92719 1.22382 0.95486 1.01782 1.03075 1.60686 1.35572 1.20771 1.14162 1.21278 0.94326 0.86549 0.97270 0.92566 1.21378 0.97351 0.96191 0.97119 1.19363 0.95212 0.93018 0.95707 1.20688 1.10156 0.99570 1.21100 1.25673 0.97865 0.99716 0.94879 1.69993 1.35459 1.23987 1.28073 0.85787 0.81047 0.79010 0.77322 1.20095 1.21924 1.17347 1.19806 0.95280 0.95024 0.95867 1.22167 0.97524 0.96986 0.99780 0.92412 0.93506 0.94050 0.90939 0.91887 0.91014 0.91548 0.93309 0.84138 0.93864 0.94772 0.98634 0.95954 0.92923 0.96409 0.94877 0.93663 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.80 71.98 0.71 -2.74 16 2 C -0.10 -2.21 5.61 30.60 0.17 -2.04 16 3 C 0.08 1.92 2.60 44.92 0.12 2.04 16 4 H 0.05 1.50 7.14 -2.39 -0.02 1.49 16 5 C -0.17 -3.49 9.05 71.98 0.65 -2.83 16 6 N -0.68 -20.49 5.59 -469.59 -2.62 -23.11 16 7 C 0.12 4.29 2.30 44.89 0.10 4.39 16 8 H 0.06 2.18 7.35 -2.38 -0.02 2.17 16 9 C -0.08 -3.58 5.54 30.66 0.17 -3.41 16 10 C 0.00 0.26 5.97 30.10 0.18 0.44 16 11 C -0.50 -26.64 5.51 -16.17 -0.09 -26.72 16 12 C 0.02 0.91 5.46 84.66 0.46 1.37 16 13 N -0.93 -56.33 12.73 21.45 0.27 -56.06 16 14 Si 0.94 43.77 27.53 68.60 1.89 45.66 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 17 H -0.25 -10.78 6.10 99.48 0.61 -10.17 16 18 C -0.02 -0.99 5.59 30.10 0.17 -0.82 16 19 C -0.13 -4.81 5.19 30.66 0.16 -4.65 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.33 7.75 -2.39 -0.02 1.31 16 22 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.10 6.69 -2.39 -0.02 1.08 16 28 H 0.34 9.78 7.91 -89.69 -0.71 9.07 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.02 1.28 7.07 -2.39 -0.02 1.27 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.03 1.48 4.59 -2.39 -0.01 1.47 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.85 6.59 -2.39 -0.02 1.83 16 Total: -1.00 -59.24 281.76 2.55 -56.68 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.22 Total: 11.81 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.80 Total: -34.98 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.35 Total: -79.17 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.89 Total: 45.66 kcal Total: -59.24 2.55 -56.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257428983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.617 kcal (2) G-P(sol) polarization free energy of solvation -59.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds