Wall clock time and date at job start Sun Mar 29 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47581 * 2 1 4 4 H 1.08995 * 109.47439 * 54.99270 * 3 2 1 5 5 C 1.52999 * 109.47439 * 175.00180 * 3 2 1 6 6 N 1.46902 * 109.46683 * 294.99889 * 3 2 1 7 7 C 1.46898 * 111.00160 * 154.99929 * 6 3 2 8 8 H 1.09008 * 109.41264 * 35.13924 * 7 6 3 9 9 C 1.52959 * 109.41564 * 154.99956 * 7 6 3 10 10 C 1.53235 * 109.40348 * 183.70788 * 9 7 6 11 11 C 1.51270 * 108.69499 * 305.27366 * 10 9 7 12 12 C 1.37881 * 120.84960 * 231.46787 * 11 10 9 13 13 N 1.31512 * 120.00029 * 348.58415 * 12 11 10 14 14 Si 1.86802 * 119.99687 * 168.58222 * 12 11 10 15 15 H 1.48494 * 109.47205 * 354.66850 * 14 12 11 16 16 H 1.48496 * 109.46830 * 114.67101 * 14 12 11 17 17 H 1.48498 * 109.46957 * 234.66783 * 14 12 11 18 18 C 1.51659 * 118.04725 * 51.26684 * 11 10 9 19 19 C 1.52963 * 109.41419 * 275.35296 * 7 6 3 20 20 H 1.08997 * 109.46652 * 60.00121 * 1 2 3 21 21 H 1.08994 * 109.47601 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47186 * 300.00484 * 1 2 3 23 23 H 1.09001 * 109.47186 * 239.99516 * 2 1 3 24 24 H 1.09005 * 109.46910 * 119.99641 * 2 1 3 25 25 H 1.09000 * 109.46892 * 299.99620 * 5 3 2 26 26 H 1.09001 * 109.47237 * 59.99808 * 5 3 2 27 27 H 1.08999 * 109.47076 * 180.02562 * 5 3 2 28 28 H 1.00895 * 111.00544 * 31.04196 * 6 3 2 29 29 H 1.08995 * 109.48571 * 63.72475 * 9 7 6 30 30 H 1.09005 * 109.49335 * 303.68968 * 9 7 6 31 31 H 1.08995 * 109.62935 * 65.08415 * 10 9 7 32 32 H 1.09005 * 109.62437 * 185.46496 * 10 9 7 33 33 H 0.97002 * 119.99545 * 179.97438 * 13 12 11 34 34 H 1.09003 * 109.55815 * 189.02480 * 18 11 10 35 35 H 1.08999 * 109.75184 * 68.61027 * 18 11 10 36 36 H 1.08997 * 109.47979 * 296.27009 * 19 7 6 37 37 H 1.09000 * 109.48000 * 56.31247 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5649 1.4442 0.1257 6 7 1.6515 2.0991 -1.2553 7 6 1.5727 3.5561 -1.0848 8 1 2.3443 3.8814 -0.3869 9 6 1.7892 4.2386 -2.4365 10 6 1.7993 5.7587 -2.2433 11 6 0.5233 6.1667 -1.5408 12 6 -0.2747 7.1692 -2.0500 13 7 0.1706 7.9339 -3.0229 14 14 -1.9882 7.4413 -1.3578 15 1 -2.2975 6.3772 -0.3694 16 1 -2.0485 8.7676 -0.6926 17 1 -2.9808 7.3955 -2.4614 18 6 0.1473 5.4378 -0.2651 19 6 0.1971 3.9294 -0.5299 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.8532 0.9569 1.0571 26 1 3.9995 0.9051 -0.7161 27 1 3.9282 2.4719 0.1261 28 1 0.7800 1.7281 -1.6028 29 1 0.9825 3.9638 -3.1159 30 1 2.7430 3.9192 -2.8566 31 1 2.6586 6.0451 -1.6371 32 1 1.8561 6.2507 -3.2144 33 1 -0.3909 8.6389 -3.3813 34 1 -0.8609 5.7237 0.0348 35 1 0.8512 5.6940 0.5267 36 1 -0.5720 3.6619 -1.2544 37 1 0.0225 3.3908 0.4016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257428984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:11 Heat of formation + Delta-G solvation = -31.349839 kcal Electronic energy + Delta-G solvation = -14808.837003 eV Core-core repulsion = 12584.590557 eV Total energy + Delta-G solvation = -2224.246446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.22173 -35.66896 -32.61349 -30.73670 -29.56286 -29.26860 -26.18976 -23.48346 -21.77907 -21.18395 -19.93600 -19.26601 -16.22164 -15.52227 -14.94107 -14.40779 -13.73623 -13.50516 -13.28367 -12.84419 -12.77159 -12.19854 -12.07705 -11.88561 -11.81101 -11.33708 -11.22494 -10.90511 -10.90030 -10.66274 -10.54133 -10.19540 -10.04287 -9.74595 -9.36583 -8.86823 -8.69228 -8.35283 -7.70448 -6.06911 -3.94826 3.27283 3.37318 3.37396 4.41417 4.63880 4.96397 5.13925 5.18822 5.22339 5.60544 5.70465 5.79310 5.83843 5.94776 5.97865 6.01749 6.15049 6.21729 6.25725 6.37490 6.48321 6.56972 6.79663 6.88816 6.94393 7.01121 7.15105 7.27038 7.45935 7.65475 7.73492 7.80735 7.92813 8.01730 8.46077 9.01942 9.59494 11.02756 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042368 B = 0.008552 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.723315 B = 3273.297928 C = 3660.617206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C 0.080 3.920 4 H 0.041 0.959 5 C -0.138 4.138 6 N -0.687 5.687 7 C 0.099 3.901 8 H 0.064 0.936 9 C -0.093 4.093 10 C 0.010 3.990 11 C -0.484 4.484 12 C 0.075 3.925 13 N -0.887 5.887 14 Si 0.876 3.124 15 H -0.258 1.258 16 H -0.284 1.284 17 H -0.286 1.286 18 C -0.022 4.022 19 C -0.133 4.133 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.334 0.666 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.002 0.998 32 H 0.052 0.948 33 H 0.263 0.737 34 H 0.037 0.963 35 H 0.015 0.985 36 H 0.049 0.951 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -12.231 5.354 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.162 4.162 3 C -0.030 4.030 4 H 0.059 0.941 5 C -0.196 4.196 6 N -0.319 5.319 7 C -0.010 4.010 8 H 0.082 0.918 9 C -0.132 4.132 10 C -0.028 4.028 11 C -0.503 4.503 12 C -0.127 4.127 13 N -0.525 5.525 14 Si 0.705 3.295 15 H -0.183 1.183 16 H -0.210 1.210 17 H -0.213 1.213 18 C -0.060 4.060 19 C -0.172 4.172 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.788 -12.075 4.977 13.182 hybrid contribution -1.847 0.321 0.815 2.044 sum -0.059 -11.754 5.792 13.104 Atomic orbital electron populations 1.21832 0.96158 1.01367 1.02034 1.21698 0.95646 0.96774 1.02095 1.21501 0.95767 0.93574 0.92194 0.94119 1.21779 0.95348 1.01899 1.00532 1.60874 1.37864 1.05518 1.27659 1.21508 0.96256 0.84826 0.98374 0.91798 1.21584 0.98719 0.98375 0.94523 1.19375 0.94918 0.90078 0.98413 1.20115 1.06662 1.16519 1.07037 1.24821 0.97925 0.94965 0.94982 1.69906 1.36463 1.18870 1.27276 0.86781 0.85408 0.78231 0.79121 1.18265 1.20993 1.21262 1.19954 0.97534 0.91466 0.97020 1.22218 0.97337 0.99817 0.97828 0.92388 0.92843 0.92894 0.91362 0.91942 0.93363 0.92367 0.92660 0.84647 0.93642 0.94559 0.97952 0.92897 0.92754 0.94498 0.96708 0.93213 0.95552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.74 37.16 0.36 -1.41 16 2 C -0.12 -1.45 5.52 -26.73 -0.15 -1.60 16 3 C 0.08 1.13 2.45 -67.71 -0.17 0.97 16 4 H 0.04 0.63 7.07 -51.93 -0.37 0.26 16 5 C -0.14 -1.84 9.40 37.16 0.35 -1.49 16 6 N -0.69 -11.38 6.05 -99.78 -0.60 -11.98 16 7 C 0.10 1.95 2.18 -67.75 -0.15 1.80 16 8 H 0.06 1.31 7.11 -51.92 -0.37 0.94 16 9 C -0.09 -2.06 5.54 -26.63 -0.15 -2.20 16 10 C 0.01 0.26 5.91 -27.48 -0.16 0.10 16 11 C -0.48 -13.00 5.50 -98.73 -0.54 -13.54 16 12 C 0.08 2.10 5.44 -17.82 -0.10 2.00 16 13 N -0.89 -26.01 12.83 55.43 0.71 -25.30 16 14 Si 0.88 21.10 27.96 -169.99 -4.75 16.34 16 15 H -0.26 -5.94 5.59 56.52 0.32 -5.63 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C -0.02 -0.52 5.67 -27.29 -0.15 -0.67 16 19 C -0.13 -2.73 5.18 -26.63 -0.14 -2.87 16 20 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.81 7.42 -51.93 -0.39 0.42 16 28 H 0.33 5.33 6.22 -39.29 -0.24 5.09 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.05 1.48 7.19 -51.93 -0.37 1.10 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.04 0.88 4.41 -51.93 -0.23 0.65 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.49 7.36 -51.93 -0.38 0.11 16 LS Contribution 280.26 15.07 4.22 4.22 Total: -1.00 -27.87 280.26 -7.97 -35.84 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.55 Total: -0.22 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.99 Total: -18.91 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.11 Total: -37.28 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.75 Total: 16.34 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.87 -7.97 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257428984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.493 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds