Wall clock time and date at job start Sun Mar 29 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47581 * 2 1 4 4 H 1.08995 * 109.47439 * 54.99270 * 3 2 1 5 5 C 1.52999 * 109.47439 * 175.00180 * 3 2 1 6 6 N 1.46902 * 109.46683 * 294.99889 * 3 2 1 7 7 C 1.46898 * 111.00160 * 154.99929 * 6 3 2 8 8 H 1.09008 * 109.41264 * 35.13924 * 7 6 3 9 9 C 1.52959 * 109.41564 * 154.99956 * 7 6 3 10 10 C 1.53235 * 109.40348 * 183.70788 * 9 7 6 11 11 C 1.51270 * 108.69499 * 305.27366 * 10 9 7 12 12 C 1.37881 * 120.84960 * 231.46787 * 11 10 9 13 13 N 1.31512 * 120.00029 * 348.58415 * 12 11 10 14 14 Si 1.86802 * 119.99687 * 168.58222 * 12 11 10 15 15 H 1.48494 * 109.47205 * 354.66850 * 14 12 11 16 16 H 1.48496 * 109.46830 * 114.67101 * 14 12 11 17 17 H 1.48498 * 109.46957 * 234.66783 * 14 12 11 18 18 C 1.51659 * 118.04725 * 51.26684 * 11 10 9 19 19 C 1.52963 * 109.41419 * 275.35296 * 7 6 3 20 20 H 1.08997 * 109.46652 * 60.00121 * 1 2 3 21 21 H 1.08994 * 109.47601 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47186 * 300.00484 * 1 2 3 23 23 H 1.09001 * 109.47186 * 239.99516 * 2 1 3 24 24 H 1.09005 * 109.46910 * 119.99641 * 2 1 3 25 25 H 1.09000 * 109.46892 * 299.99620 * 5 3 2 26 26 H 1.09001 * 109.47237 * 59.99808 * 5 3 2 27 27 H 1.08999 * 109.47076 * 180.02562 * 5 3 2 28 28 H 1.00895 * 111.00544 * 31.04196 * 6 3 2 29 29 H 1.08995 * 109.48571 * 63.72475 * 9 7 6 30 30 H 1.09005 * 109.49335 * 303.68968 * 9 7 6 31 31 H 1.08995 * 109.62935 * 65.08415 * 10 9 7 32 32 H 1.09005 * 109.62437 * 185.46496 * 10 9 7 33 33 H 0.97002 * 119.99545 * 179.97438 * 13 12 11 34 34 H 1.09003 * 109.55815 * 189.02480 * 18 11 10 35 35 H 1.08999 * 109.75184 * 68.61027 * 18 11 10 36 36 H 1.08997 * 109.47979 * 296.27009 * 19 7 6 37 37 H 1.09000 * 109.48000 * 56.31247 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5649 1.4442 0.1257 6 7 1.6515 2.0991 -1.2553 7 6 1.5727 3.5561 -1.0848 8 1 2.3443 3.8814 -0.3869 9 6 1.7892 4.2386 -2.4365 10 6 1.7993 5.7587 -2.2433 11 6 0.5233 6.1667 -1.5408 12 6 -0.2747 7.1692 -2.0500 13 7 0.1706 7.9339 -3.0229 14 14 -1.9882 7.4413 -1.3578 15 1 -2.2975 6.3772 -0.3694 16 1 -2.0485 8.7676 -0.6926 17 1 -2.9808 7.3955 -2.4614 18 6 0.1473 5.4378 -0.2651 19 6 0.1971 3.9294 -0.5299 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.8532 0.9569 1.0571 26 1 3.9995 0.9051 -0.7161 27 1 3.9282 2.4719 0.1261 28 1 0.7800 1.7281 -1.6028 29 1 0.9825 3.9638 -3.1159 30 1 2.7430 3.9192 -2.8566 31 1 2.6586 6.0451 -1.6371 32 1 1.8561 6.2507 -3.2144 33 1 -0.3909 8.6389 -3.3813 34 1 -0.8609 5.7237 0.0348 35 1 0.8512 5.6940 0.5267 36 1 -0.5720 3.6619 -1.2544 37 1 0.0225 3.3908 0.4016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257428984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:11 Heat of formation + Delta-G solvation = -47.843729 kcal Electronic energy + Delta-G solvation = -14809.552232 eV Core-core repulsion = 12584.590557 eV Total energy + Delta-G solvation = -2224.961674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69135 -37.18933 -34.40611 -32.19288 -31.40047 -30.53941 -27.90137 -24.57301 -23.54183 -23.03871 -21.15752 -20.94343 -18.11581 -16.74444 -16.47773 -16.29214 -15.03031 -14.93300 -14.68951 -14.35794 -14.28466 -14.04880 -13.74873 -13.34475 -13.01099 -12.74083 -12.73867 -12.59229 -12.36895 -11.94811 -11.89035 -11.75272 -11.60266 -11.36128 -11.22083 -10.75461 -10.63466 -10.43517 -9.12749 -8.17552 -6.09753 1.36428 1.40510 1.49152 2.40872 3.06671 3.37587 3.96026 4.08027 4.19394 4.30594 4.32646 4.57241 4.59392 4.74060 4.77627 4.86779 4.91645 5.02930 5.06388 5.08889 5.12348 5.15276 5.17905 5.28415 5.35659 5.38771 5.45919 5.52783 5.58726 5.62464 5.79384 5.85086 6.32933 6.37308 6.67551 6.95547 7.47329 8.93806 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042368 B = 0.008552 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.723315 B = 3273.297928 C = 3660.617206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.033 0.967 5 C -0.136 4.136 6 N -0.686 5.686 7 C 0.112 3.888 8 H 0.056 0.944 9 C -0.083 4.083 10 C 0.007 3.993 11 C -0.497 4.497 12 C 0.018 3.982 13 N -0.932 5.932 14 Si 0.935 3.065 15 H -0.237 1.237 16 H -0.283 1.283 17 H -0.287 1.287 18 C -0.024 4.024 19 C -0.125 4.125 20 H 0.047 0.953 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.340 0.660 29 H 0.036 0.964 30 H 0.044 0.956 31 H -0.007 1.007 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.015 0.985 36 H 0.046 0.954 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -14.452 6.896 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.033 4.033 4 H 0.051 0.949 5 C -0.194 4.194 6 N -0.318 5.318 7 C 0.002 3.998 8 H 0.074 0.926 9 C -0.121 4.121 10 C -0.031 4.031 11 C -0.516 4.516 12 C -0.180 4.180 13 N -0.572 5.572 14 Si 0.761 3.239 15 H -0.161 1.161 16 H -0.210 1.210 17 H -0.214 1.214 18 C -0.062 4.062 19 C -0.164 4.164 20 H 0.066 0.934 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.160 0.840 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.011 0.989 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.078 -14.325 6.537 15.783 hybrid contribution -1.526 0.998 0.332 1.853 sum -0.448 -13.327 6.869 15.000 Atomic orbital electron populations 1.21834 0.95840 1.02359 1.01366 1.21652 0.95852 0.94860 1.03140 1.21632 0.96306 0.94912 0.90478 0.94876 1.21771 0.94701 1.01026 1.01861 1.60777 1.38224 1.03504 1.29283 1.21200 0.95570 0.86776 0.96239 0.92552 1.21392 0.98833 0.95793 0.96120 1.19343 0.94639 0.92657 0.96432 1.20718 1.06646 1.16251 1.08022 1.25650 1.01726 0.94997 0.95605 1.70046 1.37909 1.19954 1.29282 0.85851 0.80772 0.78544 0.78765 1.16108 1.20969 1.21395 1.19963 0.97510 0.93396 0.95308 1.22106 0.97680 0.97622 0.98981 0.93361 0.91118 0.93191 0.91123 0.90070 0.91051 0.92256 0.94513 0.84032 0.94503 0.93749 0.98885 0.96233 0.92891 0.94243 0.96630 0.93510 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.74 71.98 0.70 -2.32 16 2 C -0.12 -2.33 5.52 30.59 0.17 -2.16 16 3 C 0.08 1.96 2.45 44.91 0.11 2.07 16 4 H 0.03 0.92 7.07 -2.39 -0.02 0.90 16 5 C -0.14 -3.29 9.40 71.98 0.68 -2.61 16 6 N -0.69 -21.19 6.05 -469.60 -2.84 -24.04 16 7 C 0.11 4.23 2.18 44.89 0.10 4.33 16 8 H 0.06 2.24 7.11 -2.38 -0.02 2.22 16 9 C -0.08 -3.63 5.54 30.66 0.17 -3.46 16 10 C 0.01 0.38 5.91 30.11 0.18 0.56 16 11 C -0.50 -26.82 5.50 -16.05 -0.09 -26.90 16 12 C 0.02 1.01 5.44 84.66 0.46 1.47 16 13 N -0.93 -56.24 12.83 21.45 0.28 -55.96 16 14 Si 0.93 43.26 27.96 68.60 1.92 45.17 16 15 H -0.24 -10.08 5.59 99.48 0.56 -9.53 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 C -0.02 -1.09 5.67 30.23 0.17 -0.92 16 19 C -0.12 -4.85 5.18 30.66 0.16 -4.69 16 20 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.01 7.42 -2.39 -0.02 0.99 16 28 H 0.34 10.01 6.22 -89.70 -0.56 9.45 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.02 1.12 7.19 -2.38 -0.02 1.10 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.04 1.78 4.41 -2.39 -0.01 1.77 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.75 7.36 -2.39 -0.02 1.73 16 Total: -1.00 -59.86 280.26 2.47 -57.39 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.32 Total: 12.07 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 2.81 Total: -34.64 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.57 Total: -80.00 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.92 Total: 45.17 kcal Total: -59.86 2.47 -57.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257428984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.546 kcal (2) G-P(sol) polarization free energy of solvation -59.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds