Wall clock time and date at job start Sun Mar 29 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08989 * 109.47459 * 54.99623 * 3 2 1 5 5 C 1.53001 * 109.47150 * 174.99897 * 3 2 1 6 6 N 1.46901 * 109.47275 * 294.99596 * 3 2 1 7 7 C 1.46903 * 111.00048 * 133.06920 * 6 3 2 8 8 C 1.50699 * 110.01604 * 300.42969 * 7 6 3 9 9 H 1.08002 * 119.99897 * 114.47007 * 8 7 6 10 10 C 1.37871 * 120.00269 * 294.46676 * 8 7 6 11 11 N 1.31523 * 120.00105 * 0.37368 * 10 8 7 12 12 Si 1.86801 * 120.00178 * 180.37420 * 10 8 7 13 13 H 1.48499 * 109.47069 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47164 * 120.00102 * 12 10 8 15 15 H 1.48503 * 109.47074 * 239.99711 * 12 10 8 16 16 C 1.54267 * 110.03099 * 179.04161 * 7 6 3 17 17 C 1.54974 * 104.15791 * 217.13961 * 16 7 6 18 18 C 1.54887 * 102.77825 * 37.88448 * 17 16 7 19 19 C 1.53871 * 110.03096 * 61.82412 * 7 6 3 20 20 H 1.08991 * 109.47508 * 300.00391 * 1 2 3 21 21 H 1.09006 * 109.47240 * 60.00629 * 1 2 3 22 22 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47314 * 239.99898 * 2 1 3 24 24 H 1.08996 * 109.47051 * 119.99885 * 2 1 3 25 25 H 1.09004 * 109.47145 * 58.41864 * 5 3 2 26 26 H 1.09003 * 109.47026 * 178.41328 * 5 3 2 27 27 H 1.08994 * 109.47034 * 298.41694 * 5 3 2 28 28 H 1.00903 * 110.99764 * 9.12250 * 6 3 2 29 29 H 0.97001 * 120.00206 * 180.02562 * 11 10 8 30 30 H 1.09003 * 110.48754 * 335.77840 * 16 7 6 31 31 H 1.08993 * 110.49064 * 98.42632 * 16 7 6 32 32 H 1.09006 * 110.71366 * 279.57200 * 17 16 7 33 33 H 1.08998 * 110.76282 * 156.22306 * 17 16 7 34 34 H 1.08996 * 110.48993 * 203.41330 * 18 17 16 35 35 H 1.09004 * 110.48519 * 80.76095 * 18 17 16 36 36 H 1.09001 * 110.03097 * 238.57271 * 19 7 6 37 37 H 1.09008 * 110.03092 * 359.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4444 0.1257 6 7 1.6514 2.0993 -1.2553 7 6 1.0747 3.4258 -0.9988 8 6 -0.1439 3.2977 -0.1215 9 1 -0.1385 3.7153 0.8745 10 6 -1.2656 2.6474 -0.5902 11 7 -1.2696 2.1325 -1.8005 12 14 -2.7797 2.4978 0.4934 13 1 -2.5211 3.1563 1.7990 14 1 -3.9322 3.1559 -0.1727 15 1 -3.0898 1.0625 0.7152 16 6 0.6972 4.1045 -2.3317 17 6 1.0383 5.5993 -2.1059 18 6 2.3394 5.5310 -1.2684 19 6 2.1181 4.3324 -0.3227 20 1 -0.3634 0.5138 0.8898 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9982 0.8814 -0.7009 26 1 3.9304 2.4709 0.0974 27 1 3.8520 0.9823 1.0702 28 1 1.0123 1.5229 -1.7821 29 1 -2.0589 1.6753 -2.1304 30 1 1.2919 3.6970 -3.1493 31 1 -0.3667 3.9816 -2.5345 32 1 0.2449 6.0958 -1.5473 33 1 1.2165 6.1027 -3.0561 34 1 2.4733 6.4488 -0.6959 35 1 3.1998 5.3538 -1.9138 36 1 1.7428 4.6803 0.6397 37 1 3.0523 3.7878 -0.1845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257436848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:22 Heat of formation + Delta-G solvation = -15.574255 kcal Electronic energy + Delta-G solvation = -15654.178903 eV Core-core repulsion = 13430.616538 eV Total energy + Delta-G solvation = -2223.562365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.10008 -35.10184 -32.55375 -30.44041 -28.67488 -27.33461 -26.03591 -23.96371 -22.41771 -20.04835 -18.88720 -18.27881 -16.30496 -14.93870 -14.74718 -14.26974 -13.74437 -13.24719 -12.70412 -12.46307 -12.35363 -12.17956 -11.57312 -11.35554 -11.24045 -10.74011 -10.52767 -10.46402 -10.28833 -10.18306 -9.95928 -9.90870 -9.67451 -9.39580 -9.27522 -9.15352 -8.95396 -8.21411 -6.88915 -5.99122 -4.14651 3.22943 3.33048 3.36236 4.36721 5.15355 5.64829 5.78130 5.87473 5.92703 5.96629 6.09075 6.20727 6.37123 6.45596 6.56252 6.58303 6.66345 6.70531 6.84714 6.86415 6.90377 6.91953 7.00423 7.06315 7.23277 7.31641 7.35149 7.46645 7.58961 7.69161 7.79308 8.00521 8.33658 8.79985 8.96260 9.21221 9.54465 10.94321 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.017982 C = 0.011846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.163734 B = 1556.719211 C = 2363.168750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.121 4.121 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.139 4.139 6 N -0.681 5.681 7 C 0.232 3.768 8 C -0.516 4.516 9 H 0.050 0.950 10 C 0.074 3.926 11 N -0.885 5.885 12 Si 0.875 3.125 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.096 4.096 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.118 4.118 20 H 0.045 0.955 21 H 0.111 0.889 22 H 0.023 0.977 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.352 0.648 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 0.112 1.188 4.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.159 4.159 3 C -0.022 4.022 4 H 0.078 0.922 5 C -0.197 4.197 6 N -0.314 5.314 7 C 0.142 3.858 8 C -0.555 4.555 9 H 0.069 0.931 10 C -0.126 4.126 11 N -0.526 5.526 12 Si 0.704 3.296 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.208 1.208 16 C -0.135 4.135 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.156 4.156 20 H 0.064 0.936 21 H 0.129 0.871 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.173 0.827 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.753 0.254 0.943 4.852 hybrid contribution -1.834 -0.410 1.093 2.174 sum 2.919 -0.157 2.035 3.562 Atomic orbital electron populations 1.22322 0.95409 0.99419 1.05970 1.21748 0.96817 0.97598 0.99715 1.21257 0.92954 0.92797 0.95159 0.92155 1.22027 0.97726 1.00886 0.99078 1.61163 1.47105 1.05886 1.17248 1.19104 0.89051 0.85926 0.91678 1.21894 0.98707 1.34656 1.00284 0.93140 1.24850 0.97834 0.95191 0.94754 1.69781 1.29477 1.37540 1.15826 0.86830 0.83717 0.77922 0.81177 1.19979 1.21144 1.20772 1.22276 1.02606 0.91346 0.97258 1.22445 0.96733 0.99146 0.97571 1.22264 0.97625 0.97620 0.98068 1.22452 0.99667 0.95861 0.97587 0.93631 0.87089 0.95819 0.93167 0.94064 0.93631 0.92764 0.94637 0.82694 0.92798 0.94406 0.89590 0.92511 0.94055 0.93959 0.93116 0.93562 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 8.43 37.16 0.31 -3.40 16 2 C -0.12 -2.36 5.33 -26.73 -0.14 -2.51 16 3 C 0.09 1.85 1.84 -67.71 -0.12 1.73 16 4 H 0.06 1.39 6.37 -51.94 -0.33 1.06 16 5 C -0.14 -2.50 9.33 37.16 0.35 -2.15 16 6 N -0.68 -15.39 5.85 -93.08 -0.54 -15.93 16 7 C 0.23 5.39 0.48 -131.64 -0.06 5.33 16 8 C -0.52 -13.06 6.35 -34.44 -0.22 -13.28 16 9 H 0.05 1.34 7.35 -52.49 -0.39 0.95 16 10 C 0.07 1.86 2.81 -17.82 -0.05 1.81 16 11 N -0.89 -22.42 8.24 55.43 0.46 -21.96 16 12 Si 0.88 20.43 28.81 -169.99 -4.90 15.53 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.10 -2.23 5.53 -25.03 -0.14 -2.37 16 17 C -0.12 -2.44 6.91 -24.69 -0.17 -2.61 16 18 C -0.12 -2.25 6.83 -25.07 -0.17 -2.42 16 19 C -0.12 -2.50 5.55 -25.61 -0.14 -2.64 16 20 H 0.04 1.02 7.24 -51.93 -0.38 0.64 16 21 H 0.11 2.61 3.48 -51.93 -0.18 2.43 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.98 5.57 -51.93 -0.29 0.69 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.35 8.54 5.41 -39.29 -0.21 8.33 16 29 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 31 H 0.09 2.20 5.93 -51.93 -0.31 1.89 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 37 H 0.06 1.20 4.68 -51.92 -0.24 0.96 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -24.45 266.66 -7.59 -32.05 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.07 Total: 8.82 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.56 Total: -22.53 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.09 Total: -37.89 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.90 Total: 15.53 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -24.45 -7.59 -32.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257436848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.473 kcal (2) G-P(sol) polarization free energy of solvation -24.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds