Wall clock time and date at job start Sun Mar 29 2020 21:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08989 * 109.47459 * 54.99623 * 3 2 1 5 5 C 1.53001 * 109.47150 * 174.99897 * 3 2 1 6 6 N 1.46901 * 109.47275 * 294.99596 * 3 2 1 7 7 C 1.46903 * 111.00048 * 133.06920 * 6 3 2 8 8 C 1.50699 * 110.01604 * 300.42969 * 7 6 3 9 9 H 1.08002 * 119.99897 * 114.47007 * 8 7 6 10 10 C 1.37871 * 120.00269 * 294.46676 * 8 7 6 11 11 N 1.31523 * 120.00105 * 0.37368 * 10 8 7 12 12 Si 1.86801 * 120.00178 * 180.37420 * 10 8 7 13 13 H 1.48499 * 109.47069 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47164 * 120.00102 * 12 10 8 15 15 H 1.48503 * 109.47074 * 239.99711 * 12 10 8 16 16 C 1.54267 * 110.03099 * 179.04161 * 7 6 3 17 17 C 1.54974 * 104.15791 * 217.13961 * 16 7 6 18 18 C 1.54887 * 102.77825 * 37.88448 * 17 16 7 19 19 C 1.53871 * 110.03096 * 61.82412 * 7 6 3 20 20 H 1.08991 * 109.47508 * 300.00391 * 1 2 3 21 21 H 1.09006 * 109.47240 * 60.00629 * 1 2 3 22 22 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47314 * 239.99898 * 2 1 3 24 24 H 1.08996 * 109.47051 * 119.99885 * 2 1 3 25 25 H 1.09004 * 109.47145 * 58.41864 * 5 3 2 26 26 H 1.09003 * 109.47026 * 178.41328 * 5 3 2 27 27 H 1.08994 * 109.47034 * 298.41694 * 5 3 2 28 28 H 1.00903 * 110.99764 * 9.12250 * 6 3 2 29 29 H 0.97001 * 120.00206 * 180.02562 * 11 10 8 30 30 H 1.09003 * 110.48754 * 335.77840 * 16 7 6 31 31 H 1.08993 * 110.49064 * 98.42632 * 16 7 6 32 32 H 1.09006 * 110.71366 * 279.57200 * 17 16 7 33 33 H 1.08998 * 110.76282 * 156.22306 * 17 16 7 34 34 H 1.08996 * 110.48993 * 203.41330 * 18 17 16 35 35 H 1.09004 * 110.48519 * 80.76095 * 18 17 16 36 36 H 1.09001 * 110.03097 * 238.57271 * 19 7 6 37 37 H 1.09008 * 110.03092 * 359.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4444 0.1257 6 7 1.6514 2.0993 -1.2553 7 6 1.0747 3.4258 -0.9988 8 6 -0.1439 3.2977 -0.1215 9 1 -0.1385 3.7153 0.8745 10 6 -1.2656 2.6474 -0.5902 11 7 -1.2696 2.1325 -1.8005 12 14 -2.7797 2.4978 0.4934 13 1 -2.5211 3.1563 1.7990 14 1 -3.9322 3.1559 -0.1727 15 1 -3.0898 1.0625 0.7152 16 6 0.6972 4.1045 -2.3317 17 6 1.0383 5.5993 -2.1059 18 6 2.3394 5.5310 -1.2684 19 6 2.1181 4.3324 -0.3227 20 1 -0.3634 0.5138 0.8898 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9982 0.8814 -0.7009 26 1 3.9304 2.4709 0.0974 27 1 3.8520 0.9823 1.0702 28 1 1.0123 1.5229 -1.7821 29 1 -2.0589 1.6753 -2.1304 30 1 1.2919 3.6970 -3.1493 31 1 -0.3667 3.9816 -2.5345 32 1 0.2449 6.0958 -1.5473 33 1 1.2165 6.1027 -3.0561 34 1 2.4733 6.4488 -0.6959 35 1 3.1998 5.3538 -1.9138 36 1 1.7428 4.6803 0.6397 37 1 3.0523 3.7878 -0.1845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257436848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:21 Heat of formation + Delta-G solvation = -28.555229 kcal Electronic energy + Delta-G solvation = -15654.741801 eV Core-core repulsion = 13430.616538 eV Total energy + Delta-G solvation = -2224.125262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83352 -36.73834 -34.45283 -32.13368 -30.29863 -29.04642 -27.84387 -25.76907 -24.04666 -21.68823 -20.60568 -20.01737 -18.17404 -16.78449 -16.51639 -15.95228 -15.43486 -14.97153 -14.30419 -14.16520 -14.04453 -13.86859 -13.26781 -13.07255 -13.00475 -12.51136 -12.33227 -12.23780 -12.05479 -11.83119 -11.58246 -11.55029 -11.37783 -11.12717 -10.98358 -10.88592 -10.70570 -10.14201 -8.71859 -7.92005 -6.13101 1.32603 1.40232 1.44862 2.43010 3.19870 3.99405 4.17658 4.25007 4.31481 4.39200 4.49925 4.59136 4.82318 4.93738 4.97748 5.04009 5.07413 5.11800 5.16932 5.21431 5.25708 5.29247 5.33475 5.43986 5.56234 5.63841 5.71581 5.74477 5.76912 5.84730 5.95595 6.13538 6.42328 6.87773 7.13355 7.33329 7.58388 8.97096 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.017982 C = 0.011846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.163734 B = 1556.719211 C = 2363.168750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.116 4.116 3 C 0.087 3.913 4 H 0.033 0.967 5 C -0.131 4.131 6 N -0.679 5.679 7 C 0.226 3.774 8 C -0.526 4.526 9 H 0.030 0.970 10 C 0.054 3.946 11 N -0.891 5.891 12 Si 0.910 3.090 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.280 1.280 16 C -0.096 4.096 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.117 4.117 20 H 0.026 0.974 21 H 0.090 0.910 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.339 0.661 29 H 0.261 0.739 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 0.062 1.257 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.154 4.154 3 C -0.024 4.024 4 H 0.051 0.949 5 C -0.189 4.189 6 N -0.311 5.311 7 C 0.136 3.864 8 C -0.566 4.566 9 H 0.048 0.952 10 C -0.146 4.146 11 N -0.532 5.532 12 Si 0.739 3.261 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.205 1.205 16 C -0.134 4.134 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.155 4.155 20 H 0.045 0.955 21 H 0.109 0.891 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.972 0.206 1.016 6.061 hybrid contribution -2.242 -0.422 1.085 2.526 sum 3.730 -0.217 2.101 4.287 Atomic orbital electron populations 1.22237 0.96908 0.99798 1.03951 1.21710 0.95412 0.97144 1.01106 1.21324 0.94817 0.92967 0.93252 0.94850 1.21917 0.95201 1.01176 1.00556 1.61255 1.46239 1.05600 1.18004 1.19167 0.89026 0.86747 0.91475 1.21961 1.00013 1.34859 0.99719 0.95164 1.25125 0.98969 0.95146 0.95314 1.69849 1.29572 1.37526 1.16222 0.86295 0.82122 0.77724 0.80001 1.20657 1.21253 1.20548 1.22177 1.00580 0.93643 0.97019 1.22402 0.97132 0.97045 0.98900 1.22229 0.97317 0.97533 0.97709 1.22401 0.99206 0.96527 0.97343 0.95456 0.89128 0.94250 0.92372 0.91868 0.92905 0.92970 0.92491 0.84082 0.92942 0.94960 0.92505 0.93405 0.91755 0.91776 0.91706 0.94820 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.20 8.43 71.98 0.61 -6.60 16 2 C -0.12 -4.33 5.33 30.59 0.16 -4.17 16 3 C 0.09 3.51 1.84 44.91 0.08 3.59 16 4 H 0.03 1.53 6.37 -2.39 -0.02 1.52 16 5 C -0.13 -4.37 9.33 71.98 0.67 -3.70 16 6 N -0.68 -30.30 5.85 -448.41 -2.62 -32.92 16 7 C 0.23 10.44 0.48 3.50 0.00 10.44 16 8 C -0.53 -26.98 6.35 25.60 0.16 -26.81 16 9 H 0.03 1.64 7.35 -2.91 -0.02 1.62 16 10 C 0.05 2.74 2.81 84.65 0.24 2.98 16 11 N -0.89 -45.56 8.24 21.45 0.18 -45.38 16 12 Si 0.91 42.17 28.81 68.60 1.98 44.14 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 C -0.10 -4.40 5.53 31.70 0.18 -4.22 16 17 C -0.12 -4.53 6.91 31.91 0.22 -4.31 16 18 C -0.11 -3.93 6.83 31.67 0.22 -3.71 16 19 C -0.12 -4.82 5.55 31.32 0.17 -4.65 16 20 H 0.03 1.20 7.24 -2.39 -0.02 1.18 16 21 H 0.09 4.25 3.48 -2.38 -0.01 4.24 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.05 1.76 5.57 -2.39 -0.01 1.74 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.34 16.46 5.41 -89.69 -0.49 15.97 16 29 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 30 H 0.03 1.48 8.05 -2.39 -0.02 1.46 16 31 H 0.06 2.93 5.93 -2.39 -0.01 2.92 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 1.44 7.38 -2.39 -0.02 1.42 16 37 H 0.07 2.60 4.68 -2.38 -0.01 2.59 16 Total: -1.00 -51.30 266.66 2.80 -48.50 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.55 Total: 26.82 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.71 Total: -41.16 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.45 Total: -78.31 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.98 Total: 44.14 kcal Total: -51.30 2.80 -48.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257436848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.945 kcal (2) G-P(sol) polarization free energy of solvation -51.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds