Wall clock time and date at job start Sun Mar 29 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47054 * 2 1 4 4 C 1.46895 * 111.00265 * 75.81442 * 3 2 1 5 5 C 1.50694 * 109.47247 * 195.71813 * 4 3 2 6 6 H 1.07998 * 120.00313 * 355.44064 * 5 4 3 7 7 C 1.37885 * 120.00031 * 175.44277 * 5 4 3 8 8 N 1.31509 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47338 * 60.00453 * 9 7 5 11 11 H 1.48498 * 109.46976 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47472 * 300.00007 * 9 7 5 13 13 C 1.46898 * 110.99793 * 199.76876 * 3 2 1 14 14 H 1.09006 * 109.46636 * 186.04471 * 13 3 2 15 15 C 1.53002 * 109.47424 * 306.04398 * 13 3 2 16 16 C 1.53001 * 109.47251 * 66.04521 * 13 3 2 17 17 C 1.52996 * 109.47133 * 64.99801 * 16 13 3 18 18 C 1.53000 * 117.50096 * 243.62016 * 17 16 13 19 19 C 1.53003 * 60.00074 * 252.50968 * 18 17 16 20 20 H 1.08998 * 109.47199 * 62.12366 * 1 2 3 21 21 H 1.09004 * 109.47004 * 182.11811 * 1 2 3 22 22 H 1.08995 * 109.47236 * 302.11920 * 1 2 3 23 23 H 1.08999 * 109.47656 * 239.99892 * 2 1 3 24 24 H 1.09000 * 109.47285 * 119.99854 * 2 1 3 25 25 H 1.09006 * 109.46768 * 315.71178 * 4 3 2 26 26 H 1.08996 * 109.47490 * 75.70864 * 4 3 2 27 27 H 0.97004 * 120.00207 * 179.97438 * 8 7 5 28 28 H 1.08993 * 109.47523 * 180.02562 * 15 13 3 29 29 H 1.09004 * 109.46651 * 300.00219 * 15 13 3 30 30 H 1.08996 * 109.46838 * 59.99678 * 15 13 3 31 31 H 1.09001 * 109.47092 * 184.99519 * 16 13 3 32 32 H 1.08994 * 109.47150 * 304.99530 * 16 13 3 33 33 H 1.09000 * 115.55332 * 29.32985 * 17 16 13 34 34 H 1.09003 * 117.49418 * 0.02562 * 18 17 16 35 35 H 1.09002 * 117.50160 * 145.01617 * 18 17 16 36 36 H 1.08993 * 117.49406 * 252.50595 * 19 18 17 37 37 H 1.09004 * 117.51478 * 107.47964 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8783 1.9934 1.3295 5 6 2.0170 3.4896 1.2147 6 1 2.2655 3.9375 0.2639 7 6 1.8266 4.2868 2.3235 8 7 1.5235 3.7414 3.4812 9 14 1.9992 6.1413 2.1812 10 1 1.0144 6.6560 1.1960 11 1 1.7464 6.7649 3.5049 12 1 3.3733 6.4774 1.7294 13 6 3.4119 1.4511 -0.4639 14 1 3.7838 2.4697 -0.3528 15 6 4.2730 0.5001 0.3698 16 6 3.4789 1.0413 -1.9364 17 6 2.7205 2.0636 -2.7853 18 6 1.4830 1.5754 -3.5411 19 6 2.7694 1.8952 -4.3052 20 1 -0.3633 0.4805 -0.9084 21 1 -0.3633 -1.0270 0.0380 22 1 -0.3633 0.5464 0.8703 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 0.8975 1.7498 1.7381 26 1 2.6536 1.6063 1.9906 27 1 1.3899 4.3022 4.2613 28 1 5.3061 0.5495 0.0260 29 1 4.2252 0.7921 1.4189 30 1 3.9010 -0.5184 0.2589 31 1 4.5203 1.0046 -2.2563 32 1 3.0257 0.0580 -2.0609 33 1 2.7018 3.0800 -2.3920 34 1 1.2090 0.5259 -3.4331 35 1 0.6498 2.2705 -3.6449 36 1 2.7824 2.8006 -4.9118 37 1 3.3422 1.0562 -4.7004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258461814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:34 Heat of formation + Delta-G solvation = 14.263537 kcal Electronic energy + Delta-G solvation = -14829.964453 eV Core-core repulsion = 12607.695952 eV Total energy + Delta-G solvation = -2222.268501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.34885 -36.29121 -32.67800 -31.74894 -29.21174 -26.88715 -26.00994 -22.55861 -22.07426 -21.80903 -20.13218 -18.47181 -16.23586 -15.51105 -15.07001 -14.44379 -14.10384 -13.87751 -13.51732 -12.94260 -12.31319 -12.16185 -11.80821 -11.66662 -11.21899 -11.17325 -11.14292 -10.93017 -10.73459 -10.67075 -10.65687 -10.13770 -9.99284 -9.76098 -9.49202 -9.33261 -9.08988 -8.35710 -7.04344 -5.96268 -3.96229 3.36290 3.40337 3.43291 4.24629 4.47443 4.99334 5.05662 5.32108 5.38466 5.41359 5.65640 5.76916 5.78602 5.90621 5.99433 6.04967 6.08925 6.16017 6.21149 6.24215 6.28862 6.39208 6.45487 6.53261 6.63936 6.74322 6.80229 6.89486 6.97780 7.40915 7.49682 7.89660 8.23141 8.37623 8.67052 9.11249 9.67045 11.14430 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.009976 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.679574 B = 2805.998087 C = 3185.169231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.521 5.521 4 C 0.189 3.811 5 C -0.499 4.499 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.088 3.912 14 H 0.089 0.911 15 C -0.183 4.183 16 C -0.081 4.081 17 C -0.118 4.118 18 C -0.169 4.169 19 C -0.201 4.201 20 H 0.055 0.945 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.020 0.980 25 H 0.032 0.968 26 H -0.009 1.009 27 H 0.260 0.740 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -6.056 -10.021 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.246 5.246 4 C 0.064 3.936 5 C -0.538 4.538 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.021 4.021 14 H 0.107 0.893 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.136 4.136 18 C -0.206 4.206 19 C -0.238 4.238 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.009 0.991 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.979 -5.736 -10.153 11.828 hybrid contribution 0.512 0.559 0.680 1.018 sum 2.491 -5.177 -9.474 11.080 Atomic orbital electron populations 1.21726 0.95969 0.99587 1.02660 1.21988 0.95525 0.91578 0.98772 1.62305 1.17519 1.14521 1.30206 1.19782 0.96449 0.94217 0.83139 1.21130 1.46368 0.91232 0.95062 0.92124 1.24972 0.95697 0.98638 0.95378 1.69946 1.48844 1.35349 0.99954 0.86623 0.78536 0.85614 0.76984 1.20270 1.21488 1.20373 1.21594 0.88956 0.99625 0.91912 0.89307 1.22454 0.99718 0.99851 1.02136 1.21303 0.98419 0.97327 0.94797 1.22108 0.99873 1.00875 0.90713 1.22815 0.91800 1.01392 1.04564 1.22993 1.02510 1.02585 0.95750 0.92567 0.94043 0.92264 0.92464 0.96154 0.94951 0.99130 0.93029 0.93401 0.91885 0.93513 0.92372 0.92383 0.87596 0.89564 0.89437 0.89634 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.05 37.16 0.37 -2.08 16 2 C 0.05 0.91 4.29 -3.82 -0.02 0.89 16 3 N -0.52 -10.92 4.06 -228.09 -0.93 -11.85 16 4 C 0.19 4.87 4.45 -4.98 -0.02 4.84 16 5 C -0.50 -13.92 8.53 -34.44 -0.29 -14.21 16 6 H 0.06 1.68 7.41 -52.49 -0.39 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.09 1.66 2.16 -67.71 -0.15 1.51 16 14 H 0.09 1.87 7.00 -51.93 -0.36 1.51 16 15 C -0.18 -3.18 8.54 37.16 0.32 -2.86 16 16 C -0.08 -1.26 4.91 -26.73 -0.13 -1.39 16 17 C -0.12 -1.84 5.48 -90.62 -0.50 -2.34 16 18 C -0.17 -2.43 10.18 -26.73 -0.27 -2.70 16 19 C -0.20 -2.64 10.25 -26.73 -0.27 -2.91 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 1.15 6.71 -51.93 -0.35 0.81 16 23 H 0.06 0.93 5.80 -51.93 -0.30 0.63 16 24 H 0.02 0.38 7.32 -51.93 -0.38 0.00 16 25 H 0.03 0.90 6.52 -51.93 -0.34 0.57 16 26 H -0.01 -0.25 6.25 -51.93 -0.32 -0.57 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.25 6.49 -51.93 -0.34 0.91 16 30 H 0.05 0.75 6.76 -51.93 -0.35 0.40 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.87 5.81 -51.93 -0.30 0.57 16 33 H 0.11 1.87 8.07 -51.93 -0.42 1.45 16 34 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -28.67 289.98 -8.26 -36.93 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.37 Total: -0.28 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.06 Total: -19.81 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.19 Total: -38.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.67 -8.26 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258461814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.198 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds