Wall clock time and date at job start Sun Mar 29 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47054 * 2 1 4 4 C 1.46895 * 111.00265 * 75.81442 * 3 2 1 5 5 C 1.50694 * 109.47247 * 195.71813 * 4 3 2 6 6 H 1.07998 * 120.00313 * 355.44064 * 5 4 3 7 7 C 1.37885 * 120.00031 * 175.44277 * 5 4 3 8 8 N 1.31509 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47338 * 60.00453 * 9 7 5 11 11 H 1.48498 * 109.46976 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47472 * 300.00007 * 9 7 5 13 13 C 1.46898 * 110.99793 * 199.76876 * 3 2 1 14 14 H 1.09006 * 109.46636 * 186.04471 * 13 3 2 15 15 C 1.53002 * 109.47424 * 306.04398 * 13 3 2 16 16 C 1.53001 * 109.47251 * 66.04521 * 13 3 2 17 17 C 1.52996 * 109.47133 * 64.99801 * 16 13 3 18 18 C 1.53000 * 117.50096 * 243.62016 * 17 16 13 19 19 C 1.53003 * 60.00074 * 252.50968 * 18 17 16 20 20 H 1.08998 * 109.47199 * 62.12366 * 1 2 3 21 21 H 1.09004 * 109.47004 * 182.11811 * 1 2 3 22 22 H 1.08995 * 109.47236 * 302.11920 * 1 2 3 23 23 H 1.08999 * 109.47656 * 239.99892 * 2 1 3 24 24 H 1.09000 * 109.47285 * 119.99854 * 2 1 3 25 25 H 1.09006 * 109.46768 * 315.71178 * 4 3 2 26 26 H 1.08996 * 109.47490 * 75.70864 * 4 3 2 27 27 H 0.97004 * 120.00207 * 179.97438 * 8 7 5 28 28 H 1.08993 * 109.47523 * 180.02562 * 15 13 3 29 29 H 1.09004 * 109.46651 * 300.00219 * 15 13 3 30 30 H 1.08996 * 109.46838 * 59.99678 * 15 13 3 31 31 H 1.09001 * 109.47092 * 184.99519 * 16 13 3 32 32 H 1.08994 * 109.47150 * 304.99530 * 16 13 3 33 33 H 1.09000 * 115.55332 * 29.32985 * 17 16 13 34 34 H 1.09003 * 117.49418 * 0.02562 * 18 17 16 35 35 H 1.09002 * 117.50160 * 145.01617 * 18 17 16 36 36 H 1.08993 * 117.49406 * 252.50595 * 19 18 17 37 37 H 1.09004 * 117.51478 * 107.47964 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8783 1.9934 1.3295 5 6 2.0170 3.4896 1.2147 6 1 2.2655 3.9375 0.2639 7 6 1.8266 4.2868 2.3235 8 7 1.5235 3.7414 3.4812 9 14 1.9992 6.1413 2.1812 10 1 1.0144 6.6560 1.1960 11 1 1.7464 6.7649 3.5049 12 1 3.3733 6.4774 1.7294 13 6 3.4119 1.4511 -0.4639 14 1 3.7838 2.4697 -0.3528 15 6 4.2730 0.5001 0.3698 16 6 3.4789 1.0413 -1.9364 17 6 2.7205 2.0636 -2.7853 18 6 1.4830 1.5754 -3.5411 19 6 2.7694 1.8952 -4.3052 20 1 -0.3633 0.4805 -0.9084 21 1 -0.3633 -1.0270 0.0380 22 1 -0.3633 0.5464 0.8703 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 0.8975 1.7498 1.7381 26 1 2.6536 1.6063 1.9906 27 1 1.3899 4.3022 4.2613 28 1 5.3061 0.5495 0.0260 29 1 4.2252 0.7921 1.4189 30 1 3.9010 -0.5184 0.2589 31 1 4.5203 1.0046 -2.2563 32 1 3.0257 0.0580 -2.0609 33 1 2.7018 3.0800 -2.3920 34 1 1.2090 0.5259 -3.4331 35 1 0.6498 2.2705 -3.6449 36 1 2.7824 2.8006 -4.9118 37 1 3.3422 1.0562 -4.7004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258461814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:34 Heat of formation + Delta-G solvation = -2.157568 kcal Electronic energy + Delta-G solvation = -14830.676525 eV Core-core repulsion = 12607.695952 eV Total energy + Delta-G solvation = -2222.980574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83267 -37.60302 -34.81018 -33.20444 -30.99424 -28.22550 -27.91687 -24.47893 -23.48033 -23.01937 -21.39800 -20.05802 -18.35436 -17.03015 -16.74925 -16.05007 -15.55009 -15.40885 -14.97749 -14.59120 -14.05819 -13.67373 -13.33412 -13.08498 -13.02914 -12.69679 -12.57379 -12.54660 -12.38191 -12.21962 -12.14465 -11.83789 -11.60334 -11.31439 -11.11977 -10.81156 -10.57364 -10.49414 -8.77663 -8.15747 -6.24078 1.39434 1.42377 1.49978 2.41521 3.11373 3.15492 3.43497 3.81406 4.15133 4.26600 4.27072 4.35797 4.38712 4.59921 4.68413 4.69345 4.77374 4.86385 4.89943 4.91541 5.03673 5.06503 5.14202 5.20871 5.26766 5.31648 5.39340 5.43138 5.45538 5.55822 5.62630 5.72739 6.16846 6.56317 6.81395 6.93223 7.44517 8.94416 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.009976 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.679574 B = 2805.998087 C = 3185.169231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.525 5.525 4 C 0.206 3.794 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.085 3.915 14 H 0.057 0.943 15 C -0.175 4.175 16 C -0.067 4.067 17 C -0.143 4.143 18 C -0.173 4.173 19 C -0.174 4.174 20 H 0.058 0.942 21 H 0.073 0.927 22 H 0.026 0.974 23 H 0.087 0.913 24 H 0.012 0.988 25 H 0.003 0.997 26 H -0.036 1.036 27 H 0.262 0.738 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -6.599 -12.179 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 N -0.249 5.249 4 C 0.080 3.920 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.024 4.024 14 H 0.075 0.925 15 C -0.234 4.234 16 C -0.105 4.105 17 C -0.161 4.161 18 C -0.210 4.210 19 C -0.211 4.211 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.045 0.955 23 H 0.106 0.894 24 H 0.030 0.970 25 H 0.021 0.979 26 H -0.018 1.018 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.575 -6.288 -12.334 14.082 hybrid contribution 0.329 0.687 1.329 1.532 sum 2.904 -5.601 -11.005 12.685 Atomic orbital electron populations 1.21687 0.95295 1.01180 1.01225 1.22102 0.96122 0.89952 0.99714 1.62228 1.19422 1.16343 1.26903 1.19384 0.93745 0.93692 0.85168 1.21433 1.46021 0.92568 0.94974 0.92408 1.25853 0.95296 1.03639 0.94969 1.70079 1.49843 1.37144 1.00703 0.85544 0.78935 0.79622 0.77169 1.19544 1.20968 1.19360 1.21634 0.87686 0.98465 0.94610 0.92509 1.22359 1.01155 1.00122 0.99721 1.21189 0.99907 0.97572 0.91788 1.22002 1.01759 0.99554 0.92814 1.22874 0.91804 1.01707 1.04640 1.23055 1.00967 1.03516 0.93550 0.92255 0.90790 0.95493 0.89446 0.96981 0.97915 1.01814 0.92932 0.90864 0.95326 0.91887 0.90264 0.91072 0.90583 0.88625 0.90106 0.88785 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 10.05 71.98 0.72 -3.88 16 2 C 0.05 1.74 4.29 86.30 0.37 2.11 16 3 N -0.53 -22.26 4.06 -875.53 -3.55 -25.81 16 4 C 0.21 11.10 4.45 85.56 0.38 11.48 16 5 C -0.51 -29.47 8.53 25.60 0.22 -29.25 16 6 H 0.06 3.29 7.41 -2.91 -0.02 3.27 16 7 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 9 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C 0.08 3.16 2.16 44.92 0.10 3.26 16 14 H 0.06 2.46 7.00 -2.38 -0.02 2.45 16 15 C -0.17 -5.96 8.54 71.98 0.61 -5.34 16 16 C -0.07 -1.92 4.91 30.59 0.15 -1.77 16 17 C -0.14 -4.24 5.48 -10.79 -0.06 -4.30 16 18 C -0.17 -4.59 10.18 30.60 0.31 -4.28 16 19 C -0.17 -4.00 10.25 30.60 0.31 -3.68 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 22 H 0.03 1.06 6.71 -2.39 -0.02 1.04 16 23 H 0.09 2.59 5.80 -2.39 -0.01 2.57 16 24 H 0.01 0.45 7.32 -2.39 -0.02 0.43 16 25 H 0.00 0.16 6.52 -2.38 -0.02 0.15 16 26 H -0.04 -2.07 6.25 -2.39 -0.01 -2.09 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.03 1.15 6.49 -2.38 -0.02 1.13 16 30 H 0.06 1.92 6.76 -2.39 -0.02 1.90 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.86 5.81 -2.39 -0.01 1.85 16 33 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.10 2.35 8.03 -2.39 -0.02 2.33 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -63.51 289.98 3.36 -60.16 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.01 Total: 10.74 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.58 Total: -35.22 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.27 Total: -83.10 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -63.51 3.36 -60.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258461814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.000 kcal (2) G-P(sol) polarization free energy of solvation -63.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds