Wall clock time and date at job start Sun Mar 29 2020 21:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47294 * 2 1 4 4 C 1.46896 * 110.99534 * 287.16378 * 3 2 1 5 5 C 1.50693 * 109.47513 * 77.94796 * 4 3 2 6 6 H 1.07997 * 119.99846 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00360 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99707 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46725 * 90.00635 * 9 7 5 11 11 H 1.48503 * 109.46983 * 210.00465 * 9 7 5 12 12 H 1.48499 * 109.47162 * 330.00507 * 9 7 5 13 13 C 1.46896 * 110.99829 * 163.20903 * 3 2 1 14 14 H 1.09003 * 109.46965 * 169.33824 * 13 3 2 15 15 C 1.52994 * 109.47690 * 49.33358 * 13 3 2 16 16 C 1.53004 * 109.46921 * 289.32974 * 13 3 2 17 17 C 1.53004 * 109.47249 * 294.79287 * 16 13 3 18 18 C 1.52993 * 117.50406 * 243.74708 * 17 16 13 19 19 C 1.53004 * 117.49605 * 175.08498 * 17 16 13 20 20 H 1.09007 * 109.47148 * 69.16483 * 1 2 3 21 21 H 1.08997 * 109.47482 * 189.16932 * 1 2 3 22 22 H 1.09006 * 109.47204 * 309.17050 * 1 2 3 23 23 H 1.09001 * 109.46955 * 119.99774 * 2 1 3 24 24 H 1.08995 * 109.47398 * 239.99782 * 2 1 3 25 25 H 1.09006 * 109.46574 * 197.94487 * 4 3 2 26 26 H 1.08995 * 109.47510 * 317.93972 * 4 3 2 27 27 H 0.96995 * 119.99891 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47076 * 59.99133 * 15 13 3 29 29 H 1.08994 * 109.47470 * 180.02562 * 15 13 3 30 30 H 1.09009 * 109.46909 * 300.00038 * 15 13 3 31 31 H 1.08990 * 109.47341 * 54.79965 * 16 13 3 32 32 H 1.09008 * 109.46772 * 174.79843 * 16 13 3 33 33 H 1.09004 * 115.54596 * 29.42346 * 17 16 13 34 34 H 1.09006 * 117.49750 * 0.02562 * 18 17 16 35 35 H 1.08994 * 117.49735 * 145.02110 * 18 17 16 36 36 H 1.08998 * 117.49717 * 214.98088 * 19 17 16 37 37 H 1.08993 * 117.50076 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8136 2.0162 -1.3104 5 6 0.3696 2.4239 -1.4501 6 1 -0.3255 2.2336 -0.6457 7 6 -0.0643 3.0399 -2.6048 8 7 -1.3246 3.3953 -2.7269 9 14 1.1382 3.3696 -3.9959 10 1 1.1578 2.2067 -4.9192 11 1 0.7151 4.5841 -4.7384 12 1 2.4973 3.5801 -3.4359 13 6 3.4330 1.4436 0.3962 14 1 3.8220 2.4443 0.2076 15 6 4.2333 0.4238 -0.4164 16 6 3.5587 1.1202 1.8863 17 6 2.8678 2.2123 2.7054 18 6 3.7404 3.0551 3.6376 19 6 2.7828 2.0124 4.2199 20 1 -0.3634 0.3655 -0.9605 21 1 -0.3634 -1.0145 0.1638 22 1 -0.3634 0.6491 0.7968 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 2.4496 2.8975 -1.3931 26 1 2.0692 1.3084 -2.0988 27 1 -1.6297 3.8289 -3.5391 28 1 4.1436 0.6542 -1.4779 29 1 5.2818 0.4670 -0.1221 30 1 3.8442 -0.5769 -0.2277 31 1 3.0867 0.1592 2.0906 32 1 4.6128 1.0727 2.1601 33 1 2.0298 2.7082 2.2154 34 1 4.8069 2.8318 3.6671 35 1 3.4763 4.1053 3.7612 36 1 1.8893 2.3772 4.7264 37 1 3.2188 1.1027 4.6327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258461817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:36 Heat of formation + Delta-G solvation = 20.564195 kcal Electronic energy + Delta-G solvation = -14756.490945 eV Core-core repulsion = 12534.495661 eV Total energy + Delta-G solvation = -2221.995284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.47407 -36.51825 -32.84557 -31.57190 -29.37751 -27.11854 -26.60024 -22.40702 -22.08374 -21.53373 -20.19257 -18.74436 -16.71765 -15.58673 -15.05690 -14.45072 -14.33022 -13.86607 -13.48095 -12.92343 -12.61161 -12.27779 -12.03628 -11.74468 -11.50936 -11.32326 -11.11943 -10.95428 -10.81835 -10.60358 -10.41066 -10.30280 -9.94936 -9.84053 -9.64007 -9.37915 -9.02177 -8.48969 -7.26360 -5.99164 -3.93636 3.30190 3.38344 3.40315 4.10716 4.46454 4.76729 4.96510 5.19423 5.24571 5.31737 5.51735 5.53834 5.78131 5.80798 5.84914 5.86164 6.02880 6.08401 6.10341 6.19724 6.23414 6.31978 6.39859 6.48579 6.61567 6.65728 6.83854 6.86590 6.96378 7.07518 7.45986 7.72290 8.02035 8.17852 8.74834 9.12876 9.63326 11.13312 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.008813 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.404218 B = 3176.359116 C = 3220.058190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 N -0.517 5.517 4 C 0.161 3.839 5 C -0.502 4.502 6 H 0.091 0.909 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.078 3.922 14 H 0.076 0.924 15 C -0.183 4.183 16 C -0.076 4.076 17 C -0.129 4.129 18 C -0.190 4.190 19 C -0.189 4.189 20 H 0.088 0.912 21 H 0.029 0.971 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.021 0.979 25 H 0.023 0.977 26 H -0.015 1.015 27 H 0.262 0.738 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.921 -4.840 8.252 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.240 5.240 4 C 0.035 3.965 5 C -0.540 4.540 6 H 0.109 0.891 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.697 3.303 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.032 4.032 14 H 0.094 0.906 15 C -0.242 4.242 16 C -0.114 4.114 17 C -0.147 4.147 18 C -0.227 4.227 19 C -0.226 4.226 20 H 0.107 0.893 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.003 0.997 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.515 -4.482 8.470 13.504 hybrid contribution 1.098 -0.192 -1.473 1.848 sum 10.613 -4.674 6.996 13.544 Atomic orbital electron populations 1.22001 0.94757 0.98636 1.05073 1.21917 0.96700 0.89454 0.98182 1.62164 1.13961 1.16273 1.31634 1.20241 0.98463 0.93240 0.84569 1.21264 0.92978 1.37068 1.02676 0.89079 1.24911 0.94866 0.95635 0.98118 1.69888 1.14666 1.42008 1.27627 0.86946 0.82287 0.77959 0.83063 1.20538 1.21315 1.19344 1.21733 0.89447 0.98459 0.93535 0.90586 1.22495 1.00042 1.00603 1.01082 1.21212 0.98419 0.97604 0.94117 1.22371 1.01884 1.00018 0.90455 1.23009 0.96717 0.96767 1.06244 1.22909 1.01575 1.00541 0.97574 0.89313 0.95183 0.92585 0.92952 0.96073 0.95947 0.99729 0.92832 0.92700 0.93138 0.92565 0.91739 0.92632 0.85938 0.89561 0.89332 0.89284 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.58 37.16 0.32 -2.62 16 2 C 0.07 1.23 4.25 -3.82 -0.02 1.21 16 3 N -0.52 -10.46 3.81 -228.09 -0.87 -11.33 16 4 C 0.16 3.85 3.28 -4.98 -0.02 3.83 16 5 C -0.50 -13.88 7.68 -34.44 -0.26 -14.14 16 6 H 0.09 2.70 6.15 -52.49 -0.32 2.38 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 9 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.08 1.31 2.26 -67.72 -0.15 1.15 16 14 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 15 C -0.18 -2.78 8.45 37.15 0.31 -2.46 16 16 C -0.08 -1.09 4.97 -26.73 -0.13 -1.23 16 17 C -0.13 -1.92 5.61 -90.62 -0.51 -2.43 16 18 C -0.19 -2.43 10.18 -26.70 -0.27 -2.70 16 19 C -0.19 -2.41 10.26 -26.69 -0.27 -2.69 16 20 H 0.09 2.08 5.85 -51.93 -0.30 1.78 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 23 H 0.05 0.87 6.05 -51.93 -0.31 0.55 16 24 H 0.02 0.40 6.94 -51.93 -0.36 0.04 16 25 H 0.02 0.55 6.68 -51.93 -0.35 0.20 16 26 H -0.01 -0.36 6.80 -51.93 -0.35 -0.72 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 0.90 7.42 -51.93 -0.39 0.52 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.82 6.62 -51.92 -0.34 0.48 16 31 H 0.06 0.93 6.33 -51.93 -0.33 0.60 16 32 H 0.06 0.71 7.88 -51.92 -0.41 0.30 16 33 H 0.12 2.19 7.70 -51.93 -0.40 1.79 16 34 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -28.75 283.99 -7.96 -36.71 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.37 Total: 0.41 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.10 Total: -20.30 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.10 Total: -37.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.75 -7.96 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258461817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.270 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds