Wall clock time and date at job start Sun Mar 29 2020 21:46:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46906 * 109.47294 * 2 1
4 4 C 1.46896 * 110.99534 * 287.16378 * 3 2 1
5 5 C 1.50693 * 109.47513 * 77.94796 * 4 3 2
6 6 H 1.07997 * 119.99846 * 0.02562 * 5 4 3
7 7 C 1.37879 * 120.00327 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00360 * 179.97438 * 7 5 4
9 9 Si 1.86807 * 119.99707 * 359.97438 * 7 5 4
10 10 H 1.48502 * 109.46725 * 90.00635 * 9 7 5
11 11 H 1.48503 * 109.46983 * 210.00465 * 9 7 5
12 12 H 1.48499 * 109.47162 * 330.00507 * 9 7 5
13 13 C 1.46896 * 110.99829 * 163.20903 * 3 2 1
14 14 H 1.09003 * 109.46965 * 169.33824 * 13 3 2
15 15 C 1.52994 * 109.47690 * 49.33358 * 13 3 2
16 16 C 1.53004 * 109.46921 * 289.32974 * 13 3 2
17 17 C 1.53004 * 109.47249 * 294.79287 * 16 13 3
18 18 C 1.52993 * 117.50406 * 243.74708 * 17 16 13
19 19 C 1.53004 * 117.49605 * 175.08498 * 17 16 13
20 20 H 1.09007 * 109.47148 * 69.16483 * 1 2 3
21 21 H 1.08997 * 109.47482 * 189.16932 * 1 2 3
22 22 H 1.09006 * 109.47204 * 309.17050 * 1 2 3
23 23 H 1.09001 * 109.46955 * 119.99774 * 2 1 3
24 24 H 1.08995 * 109.47398 * 239.99782 * 2 1 3
25 25 H 1.09006 * 109.46574 * 197.94487 * 4 3 2
26 26 H 1.08995 * 109.47510 * 317.93972 * 4 3 2
27 27 H 0.96995 * 119.99891 * 179.97438 * 8 7 5
28 28 H 1.08996 * 109.47076 * 59.99133 * 15 13 3
29 29 H 1.08994 * 109.47470 * 180.02562 * 15 13 3
30 30 H 1.09009 * 109.46909 * 300.00038 * 15 13 3
31 31 H 1.08990 * 109.47341 * 54.79965 * 16 13 3
32 32 H 1.09008 * 109.46772 * 174.79843 * 16 13 3
33 33 H 1.09004 * 115.54596 * 29.42346 * 17 16 13
34 34 H 1.09006 * 117.49750 * 0.02562 * 18 17 16
35 35 H 1.08994 * 117.49735 * 145.02110 * 18 17 16
36 36 H 1.08998 * 117.49717 * 214.98088 * 19 17 16
37 37 H 1.08993 * 117.50076 * 359.97438 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8136 2.0162 -1.3104
5 6 0.3696 2.4239 -1.4501
6 1 -0.3255 2.2336 -0.6457
7 6 -0.0643 3.0399 -2.6048
8 7 -1.3246 3.3953 -2.7269
9 14 1.1382 3.3696 -3.9959
10 1 1.1578 2.2067 -4.9192
11 1 0.7151 4.5841 -4.7384
12 1 2.4973 3.5801 -3.4359
13 6 3.4330 1.4436 0.3962
14 1 3.8220 2.4443 0.2076
15 6 4.2333 0.4238 -0.4164
16 6 3.5587 1.1202 1.8863
17 6 2.8678 2.2123 2.7054
18 6 3.7404 3.0551 3.6376
19 6 2.7828 2.0124 4.2199
20 1 -0.3634 0.3655 -0.9605
21 1 -0.3634 -1.0145 0.1638
22 1 -0.3634 0.6491 0.7968
23 1 1.8933 -0.5138 0.8900
24 1 1.8933 -0.5138 -0.8899
25 1 2.4496 2.8975 -1.3931
26 1 2.0692 1.3084 -2.0988
27 1 -1.6297 3.8289 -3.5391
28 1 4.1436 0.6542 -1.4779
29 1 5.2818 0.4670 -0.1221
30 1 3.8442 -0.5769 -0.2277
31 1 3.0867 0.1592 2.0906
32 1 4.6128 1.0727 2.1601
33 1 2.0298 2.7082 2.2154
34 1 4.8069 2.8318 3.6671
35 1 3.4763 4.1053 3.7612
36 1 1.8893 2.3772 4.7264
37 1 3.2188 1.1027 4.6327
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001258461817.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:46:36
Heat of formation + Delta-G solvation = 20.564195 kcal
Electronic energy + Delta-G solvation = -14756.490945 eV
Core-core repulsion = 12534.495661 eV
Total energy + Delta-G solvation = -2221.995284 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.47407 -36.51825 -32.84557 -31.57190 -29.37751 -27.11854 -26.60024 -22.40702
-22.08374 -21.53373 -20.19257 -18.74436 -16.71765 -15.58673 -15.05690 -14.45072
-14.33022 -13.86607 -13.48095 -12.92343 -12.61161 -12.27779 -12.03628 -11.74468
-11.50936 -11.32326 -11.11943 -10.95428 -10.81835 -10.60358 -10.41066 -10.30280
-9.94936 -9.84053 -9.64007 -9.37915 -9.02177 -8.48969 -7.26360 -5.99164
-3.93636 3.30190 3.38344 3.40315 4.10716 4.46454 4.76729 4.96510
5.19423 5.24571 5.31737 5.51735 5.53834 5.78131 5.80798 5.84914
5.86164 6.02880 6.08401 6.10341 6.19724 6.23414 6.31978 6.39859
6.48579 6.61567 6.65728 6.83854 6.86590 6.96378 7.07518 7.45986
7.72290 8.02035 8.17852 8.74834 9.12876 9.63326 11.13312
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.030850 B = 0.008813 C = 0.008693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.404218 B = 3176.359116 C = 3220.058190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.065 3.935
3 N -0.517 5.517
4 C 0.161 3.839
5 C -0.502 4.502
6 H 0.091 0.909
7 C 0.065 3.935
8 N -0.902 5.902
9 Si 0.870 3.130
10 H -0.279 1.279
11 H -0.287 1.287
12 H -0.269 1.269
13 C 0.078 3.922
14 H 0.076 0.924
15 C -0.183 4.183
16 C -0.076 4.076
17 C -0.129 4.129
18 C -0.190 4.190
19 C -0.189 4.189
20 H 0.088 0.912
21 H 0.029 0.971
22 H 0.055 0.945
23 H 0.052 0.948
24 H 0.021 0.979
25 H 0.023 0.977
26 H -0.015 1.015
27 H 0.262 0.738
28 H 0.054 0.946
29 H 0.050 0.950
30 H 0.055 0.945
31 H 0.064 0.936
32 H 0.055 0.945
33 H 0.123 0.877
34 H 0.086 0.914
35 H 0.088 0.912
36 H 0.089 0.911
37 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.921 -4.840 8.252 13.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.063 4.063
3 N -0.240 5.240
4 C 0.035 3.965
5 C -0.540 4.540
6 H 0.109 0.891
7 C -0.135 4.135
8 N -0.542 5.542
9 Si 0.697 3.303
10 H -0.205 1.205
11 H -0.213 1.213
12 H -0.193 1.193
13 C -0.032 4.032
14 H 0.094 0.906
15 C -0.242 4.242
16 C -0.114 4.114
17 C -0.147 4.147
18 C -0.227 4.227
19 C -0.226 4.226
20 H 0.107 0.893
21 H 0.048 0.952
22 H 0.074 0.926
23 H 0.070 0.930
24 H 0.039 0.961
25 H 0.041 0.959
26 H 0.003 0.997
27 H 0.072 0.928
28 H 0.073 0.927
29 H 0.069 0.931
30 H 0.074 0.926
31 H 0.083 0.917
32 H 0.074 0.926
33 H 0.141 0.859
34 H 0.104 0.896
35 H 0.107 0.893
36 H 0.107 0.893
37 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 9.515 -4.482 8.470 13.504
hybrid contribution 1.098 -0.192 -1.473 1.848
sum 10.613 -4.674 6.996 13.544
Atomic orbital electron populations
1.22001 0.94757 0.98636 1.05073 1.21917 0.96700 0.89454 0.98182
1.62164 1.13961 1.16273 1.31634 1.20241 0.98463 0.93240 0.84569
1.21264 0.92978 1.37068 1.02676 0.89079 1.24911 0.94866 0.95635
0.98118 1.69888 1.14666 1.42008 1.27627 0.86946 0.82287 0.77959
0.83063 1.20538 1.21315 1.19344 1.21733 0.89447 0.98459 0.93535
0.90586 1.22495 1.00042 1.00603 1.01082 1.21212 0.98419 0.97604
0.94117 1.22371 1.01884 1.00018 0.90455 1.23009 0.96717 0.96767
1.06244 1.22909 1.01575 1.00541 0.97574 0.89313 0.95183 0.92585
0.92952 0.96073 0.95947 0.99729 0.92832 0.92700 0.93138 0.92565
0.91739 0.92632 0.85938 0.89561 0.89332 0.89284 0.89597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.94 8.58 37.16 0.32 -2.62 16
2 C 0.07 1.23 4.25 -3.82 -0.02 1.21 16
3 N -0.52 -10.46 3.81 -228.09 -0.87 -11.33 16
4 C 0.16 3.85 3.28 -4.98 -0.02 3.83 16
5 C -0.50 -13.88 7.68 -34.44 -0.26 -14.14 16
6 H 0.09 2.70 6.15 -52.49 -0.32 2.38 16
7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16
8 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16
9 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16
10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16
13 C 0.08 1.31 2.26 -67.72 -0.15 1.15 16
14 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16
15 C -0.18 -2.78 8.45 37.15 0.31 -2.46 16
16 C -0.08 -1.09 4.97 -26.73 -0.13 -1.23 16
17 C -0.13 -1.92 5.61 -90.62 -0.51 -2.43 16
18 C -0.19 -2.43 10.18 -26.70 -0.27 -2.70 16
19 C -0.19 -2.41 10.26 -26.69 -0.27 -2.69 16
20 H 0.09 2.08 5.85 -51.93 -0.30 1.78 16
21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
22 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16
23 H 0.05 0.87 6.05 -51.93 -0.31 0.55 16
24 H 0.02 0.40 6.94 -51.93 -0.36 0.04 16
25 H 0.02 0.55 6.68 -51.93 -0.35 0.20 16
26 H -0.01 -0.36 6.80 -51.93 -0.35 -0.72 16
27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
28 H 0.05 0.90 7.42 -51.93 -0.39 0.52 16
29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.06 0.82 6.62 -51.92 -0.34 0.48 16
31 H 0.06 0.93 6.33 -51.93 -0.33 0.60 16
32 H 0.06 0.71 7.88 -51.92 -0.41 0.30 16
33 H 0.12 2.19 7.70 -51.93 -0.40 1.79 16
34 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16
35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 283.99 15.07 4.28 4.28
Total: -1.00 -28.75 283.99 -7.96 -36.71
By element:
Atomic # 1 Polarization: 6.78 SS G_CDS: -6.37 Total: 0.41 kcal
Atomic # 6 Polarization: -19.20 SS G_CDS: -1.10 Total: -20.30 kcal
Atomic # 7 Polarization: -37.90 SS G_CDS: -0.10 Total: -37.99 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -28.75 -7.96 -36.71 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001258461817.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.270 kcal
(2) G-P(sol) polarization free energy of solvation -28.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.564 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds