Wall clock time and date at job start Sun Mar 29 2020 21:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47294 * 2 1 4 4 C 1.46896 * 110.99534 * 287.16378 * 3 2 1 5 5 C 1.50693 * 109.47513 * 77.94796 * 4 3 2 6 6 H 1.07997 * 119.99846 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00360 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99707 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46725 * 90.00635 * 9 7 5 11 11 H 1.48503 * 109.46983 * 210.00465 * 9 7 5 12 12 H 1.48499 * 109.47162 * 330.00507 * 9 7 5 13 13 C 1.46896 * 110.99829 * 163.20903 * 3 2 1 14 14 H 1.09003 * 109.46965 * 169.33824 * 13 3 2 15 15 C 1.52994 * 109.47690 * 49.33358 * 13 3 2 16 16 C 1.53004 * 109.46921 * 289.32974 * 13 3 2 17 17 C 1.53004 * 109.47249 * 294.79287 * 16 13 3 18 18 C 1.52993 * 117.50406 * 243.74708 * 17 16 13 19 19 C 1.53004 * 117.49605 * 175.08498 * 17 16 13 20 20 H 1.09007 * 109.47148 * 69.16483 * 1 2 3 21 21 H 1.08997 * 109.47482 * 189.16932 * 1 2 3 22 22 H 1.09006 * 109.47204 * 309.17050 * 1 2 3 23 23 H 1.09001 * 109.46955 * 119.99774 * 2 1 3 24 24 H 1.08995 * 109.47398 * 239.99782 * 2 1 3 25 25 H 1.09006 * 109.46574 * 197.94487 * 4 3 2 26 26 H 1.08995 * 109.47510 * 317.93972 * 4 3 2 27 27 H 0.96995 * 119.99891 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47076 * 59.99133 * 15 13 3 29 29 H 1.08994 * 109.47470 * 180.02562 * 15 13 3 30 30 H 1.09009 * 109.46909 * 300.00038 * 15 13 3 31 31 H 1.08990 * 109.47341 * 54.79965 * 16 13 3 32 32 H 1.09008 * 109.46772 * 174.79843 * 16 13 3 33 33 H 1.09004 * 115.54596 * 29.42346 * 17 16 13 34 34 H 1.09006 * 117.49750 * 0.02562 * 18 17 16 35 35 H 1.08994 * 117.49735 * 145.02110 * 18 17 16 36 36 H 1.08998 * 117.49717 * 214.98088 * 19 17 16 37 37 H 1.08993 * 117.50076 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8136 2.0162 -1.3104 5 6 0.3696 2.4239 -1.4501 6 1 -0.3255 2.2336 -0.6457 7 6 -0.0643 3.0399 -2.6048 8 7 -1.3246 3.3953 -2.7269 9 14 1.1382 3.3696 -3.9959 10 1 1.1578 2.2067 -4.9192 11 1 0.7151 4.5841 -4.7384 12 1 2.4973 3.5801 -3.4359 13 6 3.4330 1.4436 0.3962 14 1 3.8220 2.4443 0.2076 15 6 4.2333 0.4238 -0.4164 16 6 3.5587 1.1202 1.8863 17 6 2.8678 2.2123 2.7054 18 6 3.7404 3.0551 3.6376 19 6 2.7828 2.0124 4.2199 20 1 -0.3634 0.3655 -0.9605 21 1 -0.3634 -1.0145 0.1638 22 1 -0.3634 0.6491 0.7968 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 2.4496 2.8975 -1.3931 26 1 2.0692 1.3084 -2.0988 27 1 -1.6297 3.8289 -3.5391 28 1 4.1436 0.6542 -1.4779 29 1 5.2818 0.4670 -0.1221 30 1 3.8442 -0.5769 -0.2277 31 1 3.0867 0.1592 2.0906 32 1 4.6128 1.0727 2.1601 33 1 2.0298 2.7082 2.2154 34 1 4.8069 2.8318 3.6671 35 1 3.4763 4.1053 3.7612 36 1 1.8893 2.3772 4.7264 37 1 3.2188 1.1027 4.6327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258461817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:35 Heat of formation + Delta-G solvation = 3.514419 kcal Electronic energy + Delta-G solvation = -14757.230279 eV Core-core repulsion = 12534.495661 eV Total energy + Delta-G solvation = -2222.734618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87078 -37.75264 -34.82793 -33.16665 -31.15361 -28.47127 -28.23729 -24.07354 -23.29272 -23.04600 -21.41641 -20.25221 -18.77656 -16.96467 -16.50565 -16.20879 -15.75523 -15.30122 -15.05845 -14.56770 -14.19740 -13.71562 -13.34561 -13.31931 -13.20488 -12.73368 -12.62700 -12.43999 -12.27139 -12.08329 -11.95594 -11.82209 -11.67044 -11.37163 -11.07748 -10.88080 -10.68727 -10.54211 -8.85696 -8.20617 -6.19195 1.32940 1.35067 1.44771 2.37271 3.04718 3.11041 3.30223 3.81109 4.10178 4.17147 4.28501 4.33556 4.37456 4.57083 4.64053 4.70455 4.78327 4.82681 4.85853 4.88105 4.92699 5.04801 5.11341 5.13054 5.14999 5.31082 5.34000 5.37039 5.43699 5.63418 5.65731 5.74193 6.14430 6.56197 6.79417 6.87791 7.41480 8.94990 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.008813 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.404218 B = 3176.359116 C = 3220.058190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 N -0.531 5.531 4 C 0.174 3.826 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.935 3.065 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.254 1.254 13 C 0.074 3.926 14 H 0.064 0.936 15 C -0.177 4.177 16 C -0.064 4.064 17 C -0.155 4.155 18 C -0.180 4.180 19 C -0.178 4.178 20 H 0.046 0.954 21 H 0.059 0.941 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.022 0.978 25 H 0.017 0.983 26 H -0.016 1.016 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.634 -5.962 9.035 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 N -0.255 5.255 4 C 0.046 3.954 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.178 1.178 13 C -0.035 4.035 14 H 0.082 0.918 15 C -0.236 4.236 16 C -0.102 4.102 17 C -0.173 4.173 18 C -0.217 4.217 19 C -0.215 4.215 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.002 0.998 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.250 -5.615 9.271 16.357 hybrid contribution 0.196 0.146 -1.603 1.622 sum 12.445 -5.469 7.668 15.608 Atomic orbital electron populations 1.21859 0.96141 0.99755 1.01916 1.21936 0.95449 0.88898 0.99626 1.62041 1.16982 1.17180 1.29296 1.19952 0.95533 0.93231 0.86663 1.21507 0.94575 1.36072 1.01549 0.92499 1.25751 0.96556 0.95778 1.01043 1.70040 1.16841 1.43678 1.28612 0.85887 0.80433 0.77951 0.79718 1.19697 1.21065 1.17769 1.21833 0.87327 0.98664 0.95632 0.91795 1.22422 1.01491 1.00127 0.99554 1.21135 0.99962 0.97250 0.91839 1.22209 1.01956 1.01378 0.91753 1.23090 0.97576 0.96662 1.04360 1.22982 1.01648 1.01282 0.95584 0.93527 0.92163 0.94278 0.89870 0.95932 0.96471 0.99837 0.92825 0.94456 0.90328 0.91765 0.91417 0.89935 0.89895 0.87626 0.89517 0.89446 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 8.58 71.98 0.62 -4.99 16 2 C 0.07 2.49 4.25 86.30 0.37 2.86 16 3 N -0.53 -21.29 3.81 -875.55 -3.34 -24.63 16 4 C 0.17 8.31 3.28 85.56 0.28 8.59 16 5 C -0.50 -28.50 7.68 25.60 0.20 -28.31 16 6 H 0.06 3.57 6.15 -2.91 -0.02 3.55 16 7 C 0.01 0.29 5.47 84.65 0.46 0.76 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 9 Si 0.94 44.88 27.47 68.60 1.88 46.77 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.25 -11.46 6.54 99.48 0.65 -10.80 16 13 C 0.07 2.35 2.26 44.92 0.10 2.45 16 14 H 0.06 2.17 7.70 -2.39 -0.02 2.16 16 15 C -0.18 -4.82 8.45 71.98 0.61 -4.21 16 16 C -0.06 -1.67 4.97 30.60 0.15 -1.51 16 17 C -0.15 -4.38 5.61 -10.79 -0.06 -4.44 16 18 C -0.18 -4.16 10.18 30.62 0.31 -3.85 16 19 C -0.18 -4.12 10.26 30.62 0.31 -3.80 16 20 H 0.05 2.26 5.85 -2.38 -0.01 2.25 16 21 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.04 1.66 7.86 -2.38 -0.02 1.64 16 23 H 0.08 2.52 6.05 -2.39 -0.01 2.51 16 24 H 0.02 0.82 6.94 -2.39 -0.02 0.80 16 25 H 0.02 0.84 6.68 -2.38 -0.02 0.82 16 26 H -0.02 -0.77 6.80 -2.39 -0.02 -0.78 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.04 1.14 7.42 -2.39 -0.02 1.12 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.64 6.62 -2.38 -0.02 1.63 16 31 H 0.07 1.70 6.33 -2.39 -0.02 1.69 16 32 H 0.08 1.72 7.88 -2.38 -0.02 1.70 16 33 H 0.08 3.03 7.70 -2.39 -0.02 3.01 16 34 H 0.11 2.05 8.03 -2.38 -0.02 2.03 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -63.85 283.99 3.16 -60.69 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.96 Total: 13.13 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.35 Total: -36.47 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.04 Total: -84.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -63.85 3.16 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258461817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.208 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds