Wall clock time and date at job start Sun Mar 29 2020 21:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48495 * 109.47069 * 270.00018 * 3 2 1 5 5 H 1.48496 * 109.46875 * 30.00133 * 3 2 1 6 6 H 1.48494 * 109.46711 * 149.99953 * 3 2 1 7 7 C 1.37882 * 119.99313 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99225 * 180.02562 * 7 2 1 10 10 S 1.81403 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.81394 * 103.00141 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47223 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47362 * 179.97438 * 12 11 10 14 14 C 1.36890 * 126.39499 * 269.96938 * 13 12 11 15 15 C 1.34669 * 106.81617 * 180.02562 * 14 13 12 16 16 N 1.34134 * 108.02026 * 0.02562 * 15 14 13 17 17 C 1.30493 * 109.25480 * 0.02562 * 16 15 14 18 18 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47525 * 59.99975 * 9 7 2 20 20 H 1.09001 * 109.46988 * 299.99499 * 9 7 2 21 21 H 1.09004 * 109.47735 * 59.99535 * 11 10 9 22 22 H 1.09005 * 109.47284 * 299.99580 * 11 10 9 23 23 H 1.09000 * 109.47395 * 59.99624 * 12 11 10 24 24 H 1.08994 * 109.47038 * 299.99778 * 12 11 10 25 25 H 1.07996 * 126.59258 * 0.08195 * 14 13 12 26 26 H 1.08002 * 125.99042 * 180.26007 * 15 14 13 27 27 H 1.08006 * 125.64594 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 16 4.1161 -2.9044 -0.0001 11 6 5.9185 -2.7001 -0.0001 12 6 6.5878 -4.0759 -0.0009 13 7 8.0434 -3.9109 -0.0016 14 6 8.8500 -3.8197 -1.1038 15 6 10.1110 -3.6772 -0.6531 16 7 10.0755 -3.6820 0.6878 17 6 8.8404 -3.8225 1.0850 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6809 0.8905 20 1 3.8751 -0.6798 -0.8895 21 1 6.2217 -2.1486 0.8898 22 1 6.2216 -2.1486 -0.8902 23 1 6.2845 -4.6270 -0.8911 24 1 6.2847 -4.6278 0.8888 25 1 8.5355 -3.8543 -2.1364 26 1 10.9955 -3.5733 -1.2642 27 1 8.5102 -3.8601 2.1126 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353324.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:56 Heat of formation + Delta-G solvation = 53.903206 kcal Electronic energy + Delta-G solvation = -11199.566608 eV Core-core repulsion = 9084.677783 eV Total energy + Delta-G solvation = -2114.888825 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.04732 -35.00890 -33.14977 -30.26321 -29.49607 -29.32038 -24.21458 -22.45798 -21.37203 -20.86280 -17.53267 -17.04488 -15.91394 -15.11669 -14.92716 -14.34048 -14.04759 -13.93821 -13.47504 -12.96948 -12.79534 -12.75069 -12.31342 -11.61392 -10.89985 -10.63308 -10.31557 -10.03529 -9.78500 -9.65865 -9.19677 -8.81302 -8.58444 -7.04931 -6.27895 -4.31313 1.88019 2.13360 2.99057 3.12886 3.13862 3.21451 3.22352 3.43736 4.21855 4.52800 4.66726 4.73134 4.86148 5.03055 5.18371 5.29218 5.41627 5.64789 5.75826 6.22159 6.43530 6.54548 6.66936 7.10702 7.29842 8.01335 8.19024 8.73698 9.27085 10.83966 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.059574 B = 0.005796 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.890579 B = 4829.677875 C = 5103.796708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.085 0.915 9 C 0.051 3.949 10 S -0.254 6.254 11 C -0.121 4.121 12 C 0.125 3.875 13 N -0.454 5.454 14 C -0.054 4.054 15 C -0.036 4.036 16 N -0.500 5.500 17 C 0.181 3.819 18 H 0.269 0.731 19 H 0.036 0.964 20 H 0.031 0.969 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.167 0.833 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.456 -5.827 -0.995 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.103 0.897 9 C -0.096 4.096 10 S -0.028 6.028 11 C -0.270 4.270 12 C 0.001 3.999 13 N -0.137 5.137 14 C -0.188 4.188 15 C -0.184 4.184 16 N -0.218 5.218 17 C -0.101 4.101 18 H 0.079 0.921 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.190 0.810 26 H 0.185 0.815 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.239 -6.591 -0.479 15.698 hybrid contribution 0.252 2.085 -0.598 2.184 sum 14.491 -4.506 -1.077 15.213 Atomic orbital electron populations 1.69859 1.06141 1.27444 1.49095 1.24848 0.94770 0.98738 0.94010 0.86806 0.80270 0.83577 0.78874 1.19819 1.20635 1.19145 1.20439 0.86711 0.95401 1.53188 0.89733 1.21442 1.01204 0.87709 0.99283 1.86704 0.98291 1.19791 1.97992 1.23658 0.98769 0.99286 1.05306 1.21633 0.75345 0.96996 1.05883 1.45734 1.08034 1.52917 1.07017 1.22797 0.91576 1.11433 0.92987 1.22287 0.96508 1.08267 0.91324 1.70284 1.19545 1.19871 1.12134 1.25034 0.85821 1.05369 0.93898 0.92077 0.94548 0.95032 0.90100 0.90183 0.88092 0.87849 0.80978 0.81532 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.51 15 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 15 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 15 7 C -0.52 -14.36 9.68 -34.44 -0.33 -14.69 15 8 H 0.08 2.57 7.96 -52.49 -0.42 2.15 15 9 C 0.05 1.19 4.77 36.01 0.17 1.36 15 10 S -0.25 -4.85 21.66 -107.50 -2.33 -7.18 15 11 C -0.12 -1.71 6.26 37.16 0.23 -1.48 15 12 C 0.12 1.38 6.16 -4.04 -0.02 1.36 15 13 N -0.45 -5.29 2.75 -118.58 -0.33 -5.61 15 14 C -0.05 -0.61 11.58 -16.56 -0.19 -0.80 15 15 C -0.04 -0.44 11.87 -17.81 -0.21 -0.65 15 16 N -0.50 -7.04 11.25 -14.66 -0.16 -7.20 15 17 C 0.18 2.20 12.56 -90.38 -1.14 1.07 15 18 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 19 H 0.04 0.83 7.20 -51.92 -0.37 0.46 15 20 H 0.03 0.71 7.57 -51.92 -0.39 0.32 15 21 H 0.08 1.15 8.14 -51.92 -0.42 0.72 15 22 H 0.08 1.14 8.14 -51.92 -0.42 0.72 15 23 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.17 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.17 1.61 8.06 -52.49 -0.42 1.18 15 27 H 0.20 1.84 8.06 -52.48 -0.42 1.41 15 LS Contribution 253.97 15.07 3.83 3.83 Total: -1.00 -30.93 253.97 -7.79 -38.72 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.31 Total: -1.24 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.59 Total: -11.66 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.28 Total: -38.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.33 Total: -7.18 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.93 -7.79 -38.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353324.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.624 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds