Wall clock time and date at job start Sun Mar 29 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 S 1.81405 * 109.47038 * 270.01593 * 6 5 4 8 8 C 1.81402 * 103.00270 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47120 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00364 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99720 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99949 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00179 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47357 * 89.99760 * 13 11 9 15 15 H 1.48501 * 109.47151 * 209.99872 * 13 11 9 16 16 H 1.48497 * 109.46924 * 329.99731 * 13 11 9 17 17 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 19 19 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 20 20 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 21 21 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 22 22 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47486 * 30.01360 * 6 5 4 24 24 H 1.09006 * 109.47537 * 150.01822 * 6 5 4 25 25 H 1.09005 * 109.46699 * 299.99894 * 8 7 6 26 26 H 1.08996 * 109.47014 * 59.99462 * 8 7 6 27 27 H 0.96996 * 120.00013 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 16 5.2359 -1.9811 -1.7121 8 6 6.6897 -3.0467 -1.5089 9 6 7.2205 -3.4360 -2.8645 10 1 6.7319 -3.0785 -3.7588 11 6 8.3300 -4.2486 -2.9630 12 7 8.7930 -4.5888 -4.1460 13 14 9.1748 -4.8676 -1.4162 14 1 8.5713 -6.1611 -1.0064 15 1 10.6223 -5.0601 -1.6859 16 1 9.0022 -3.8736 -0.3265 17 7 2.2892 -1.1327 -0.0002 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.9281 2.1193 -0.0007 22 1 4.4211 1.2964 -0.0011 23 1 5.5696 -1.1210 0.5118 24 1 4.5166 -2.5561 0.5126 25 1 7.4609 -2.5081 -0.9581 26 1 6.4085 -3.9436 -0.9571 27 1 9.5733 -5.1608 -4.2153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353737.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:46 Heat of formation + Delta-G solvation = 72.842245 kcal Electronic energy + Delta-G solvation = -11194.843753 eV Core-core repulsion = 9080.776186 eV Total energy + Delta-G solvation = -2114.067567 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.04396 -33.86408 -32.99552 -30.27771 -29.42746 -29.10975 -25.44090 -22.48511 -21.07941 -19.73872 -17.04257 -16.78586 -15.66510 -15.19130 -14.33900 -14.14246 -13.89373 -13.53848 -13.14007 -12.71395 -12.60480 -12.39013 -12.14140 -12.02472 -10.79258 -10.58816 -10.47963 -10.10394 -9.66113 -9.13170 -8.84008 -8.67596 -8.44324 -6.72400 -6.14151 -4.15945 1.80631 2.33093 2.54907 3.24673 3.30561 3.33159 3.34850 3.73612 4.34652 4.46465 4.77889 4.96668 5.00315 5.17143 5.24903 5.29808 5.73294 5.85637 5.89343 6.13996 6.63121 6.70511 6.74454 7.04434 7.47048 7.81095 8.34589 8.89066 9.41561 10.98022 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.075549 B = 0.005850 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.533179 B = 4785.160836 C = 4879.813936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.047 3.953 4 C -0.256 4.256 5 C 0.102 3.898 6 C -0.024 4.024 7 S -0.246 6.246 8 C 0.043 3.957 9 C -0.512 4.512 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.892 5.892 13 Si 0.879 3.121 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.265 1.265 17 N -0.284 5.284 18 H 0.071 0.929 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.173 0.827 22 H 0.149 0.851 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 10.500 10.876 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.164 5.164 3 C -0.099 4.099 4 C -0.286 4.286 5 C -0.065 4.065 6 C -0.173 4.173 7 S -0.020 6.020 8 C -0.105 4.105 9 C -0.551 4.551 10 H 0.102 0.898 11 C -0.125 4.125 12 N -0.530 5.530 13 Si 0.705 3.295 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.190 1.190 17 N -0.108 5.108 18 H 0.090 0.910 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.190 0.810 22 H 0.167 0.833 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.205 9.755 9.864 19.856 hybrid contribution 1.553 -0.036 1.795 2.374 sum -12.653 9.719 11.659 19.761 Atomic orbital electron populations 1.21799 0.74506 1.04422 1.03012 1.48488 1.06473 1.03893 1.57535 1.22466 0.91125 0.93329 1.02943 1.21406 0.97117 0.94306 1.15771 1.21531 0.92304 0.93565 0.99119 1.21569 0.94850 1.00379 1.00525 1.87005 1.41048 1.67310 1.06643 1.21459 0.91840 0.95227 1.01955 1.20475 1.12865 1.31250 0.90529 0.89842 1.24860 0.96215 0.95274 0.96181 1.69869 1.24283 1.35997 1.22870 0.86795 0.79129 0.79808 0.83743 1.19909 1.20851 1.18995 1.77380 1.01248 1.07387 1.24749 0.91044 0.89657 0.89319 0.81031 0.83314 0.88867 0.89432 0.94573 0.95077 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.47 59.85 0.69 1.51 15 2 N -0.38 -4.99 4.01 -68.16 -0.27 -5.27 15 3 C 0.05 0.55 11.49 -17.22 -0.20 0.35 15 4 C -0.26 -3.65 10.74 -40.01 -0.43 -4.08 15 5 C 0.10 1.73 6.48 -82.41 -0.53 1.19 15 6 C -0.02 -0.42 6.50 36.00 0.23 -0.19 15 7 S -0.25 -5.51 21.64 -107.50 -2.33 -7.84 15 8 C 0.04 1.07 4.77 36.00 0.17 1.24 15 9 C -0.51 -14.96 9.68 -34.44 -0.33 -15.29 15 10 H 0.08 2.68 7.96 -52.49 -0.42 2.26 15 11 C 0.08 2.29 5.47 -17.82 -0.10 2.20 15 12 N -0.89 -27.37 13.96 55.43 0.77 -26.59 15 13 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 15 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 16 H -0.27 -6.10 6.54 56.52 0.37 -5.74 15 17 N -0.28 -4.88 12.58 33.67 0.42 -4.46 15 18 H 0.07 0.45 8.14 -51.93 -0.42 0.03 15 19 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15 20 H 0.09 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.17 1.25 8.06 -52.49 -0.42 0.82 15 22 H 0.15 1.86 8.06 -52.49 -0.42 1.43 15 23 H 0.09 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.09 1.51 8.14 -51.92 -0.42 1.08 15 25 H 0.04 0.87 7.20 -51.92 -0.37 0.49 15 26 H 0.03 0.75 7.57 -51.93 -0.39 0.35 15 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 254.86 15.07 3.84 3.84 Total: -1.00 -33.85 254.86 -6.04 -39.89 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.31 Total: -3.09 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.50 Total: -13.06 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.92 Total: -36.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -2.33 Total: -7.84 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.85 -6.04 -39.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353737.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.729 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds