Wall clock time and date at job start Sun Mar 29 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 S 1.81405 * 109.47038 * 270.01593 * 6 5 4 8 8 C 1.81402 * 103.00270 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47120 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00364 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99720 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99949 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00179 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47357 * 89.99760 * 13 11 9 15 15 H 1.48501 * 109.47151 * 209.99872 * 13 11 9 16 16 H 1.48497 * 109.46924 * 329.99731 * 13 11 9 17 17 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 19 19 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 20 20 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 21 21 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 22 22 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47486 * 30.01360 * 6 5 4 24 24 H 1.09006 * 109.47537 * 150.01822 * 6 5 4 25 25 H 1.09005 * 109.46699 * 299.99894 * 8 7 6 26 26 H 1.08996 * 109.47014 * 59.99462 * 8 7 6 27 27 H 0.96996 * 120.00013 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 16 5.2359 -1.9811 -1.7121 8 6 6.6897 -3.0467 -1.5089 9 6 7.2205 -3.4360 -2.8645 10 1 6.7319 -3.0785 -3.7588 11 6 8.3300 -4.2486 -2.9630 12 7 8.7930 -4.5888 -4.1460 13 14 9.1748 -4.8676 -1.4162 14 1 8.5713 -6.1611 -1.0064 15 1 10.6223 -5.0601 -1.6859 16 1 9.0022 -3.8736 -0.3265 17 7 2.2892 -1.1327 -0.0002 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.9281 2.1193 -0.0007 22 1 4.4211 1.2964 -0.0011 23 1 5.5696 -1.1210 0.5118 24 1 4.5166 -2.5561 0.5126 25 1 7.4609 -2.5081 -0.9581 26 1 6.4085 -3.9436 -0.9571 27 1 9.5733 -5.1608 -4.2153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307353737.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:46 Heat of formation + Delta-G solvation = 49.810367 kcal Electronic energy + Delta-G solvation = -11195.842490 eV Core-core repulsion = 9080.776186 eV Total energy + Delta-G solvation = -2115.066304 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07818 -35.20014 -34.86652 -31.48663 -31.24425 -30.36948 -26.41420 -24.59663 -22.04087 -20.90692 -19.07221 -17.92083 -17.15674 -16.49957 -16.02771 -15.47770 -15.20823 -14.91667 -14.52606 -14.37482 -14.09732 -13.47392 -13.29123 -13.17897 -12.64583 -12.28060 -12.09320 -11.76678 -11.59970 -10.88776 -10.78580 -10.14462 -9.47618 -8.51031 -8.36517 -6.46526 0.47438 1.17045 1.35743 1.37806 1.48806 1.67117 1.91468 2.14784 2.30982 2.96388 3.51033 3.83953 4.16324 4.20605 4.46086 4.48971 4.62837 4.70547 4.77010 4.78014 4.89507 5.09515 5.33767 5.60008 6.07978 6.19997 6.57072 6.72319 7.15688 8.79568 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.075549 B = 0.005850 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.533179 B = 4785.160836 C = 4879.813936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.379 5.379 3 C 0.066 3.934 4 C -0.281 4.281 5 C 0.074 3.926 6 C -0.004 4.004 7 S -0.290 6.290 8 C 0.050 3.950 9 C -0.531 4.531 10 H 0.033 0.967 11 C 0.018 3.982 12 N -0.941 5.941 13 Si 0.956 3.044 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.242 1.242 17 N -0.329 5.329 18 H 0.091 0.909 19 H 0.121 0.879 20 H 0.081 0.919 21 H 0.223 0.777 22 H 0.161 0.839 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 11.810 13.379 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.080 4.080 4 C -0.311 4.311 5 C -0.091 4.091 6 C -0.153 4.153 7 S -0.064 6.064 8 C -0.099 4.099 9 C -0.569 4.569 10 H 0.052 0.948 11 C -0.181 4.181 12 N -0.580 5.580 13 Si 0.777 3.223 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.165 1.165 17 N -0.154 5.154 18 H 0.109 0.891 19 H 0.140 0.860 20 H 0.100 0.900 21 H 0.239 0.761 22 H 0.178 0.822 23 H 0.133 0.867 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.076 11.064 12.363 22.417 hybrid contribution 1.612 -0.328 0.965 1.907 sum -13.464 10.736 13.328 21.776 Atomic orbital electron populations 1.22233 0.71734 1.05923 1.04812 1.48918 1.08070 1.03284 1.55891 1.23203 0.90045 0.94936 0.99810 1.21704 0.98995 0.93316 1.17063 1.21512 0.91970 0.94706 1.00905 1.21523 0.96280 1.01192 0.96289 1.87074 1.40242 1.66926 1.12142 1.21239 0.93055 0.96178 0.99378 1.20664 1.13353 1.31784 0.91131 0.94843 1.25930 0.96804 0.95115 1.00288 1.70025 1.25157 1.36973 1.25849 0.85584 0.77767 0.79810 0.79094 1.18786 1.20092 1.16504 1.77263 1.01916 1.10027 1.26202 0.89065 0.86044 0.89991 0.76063 0.82166 0.86746 0.89195 0.93294 0.94124 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.47 127.77 1.47 2.63 15 2 N -0.38 -8.93 4.01 -369.56 -1.48 -10.41 15 3 C 0.07 1.33 11.49 83.54 0.96 2.29 15 4 C -0.28 -7.41 10.74 21.99 0.24 -7.18 15 5 C 0.07 2.44 6.48 43.10 0.28 2.72 15 6 C 0.00 -0.12 6.50 71.23 0.46 0.34 15 7 S -0.29 -13.13 21.64 -56.49 -1.22 -14.36 15 8 C 0.05 2.45 4.77 71.23 0.34 2.79 15 9 C -0.53 -31.96 9.68 25.60 0.25 -31.71 15 10 H 0.03 2.28 7.96 -2.91 -0.02 2.26 15 11 C 0.02 1.08 5.47 84.66 0.46 1.55 15 12 N -0.94 -59.30 13.96 21.45 0.30 -59.00 15 13 Si 0.96 43.36 27.47 68.60 1.88 45.24 15 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 16 H -0.24 -9.98 6.54 99.48 0.65 -9.33 15 17 N -0.33 -10.97 12.58 -47.39 -0.60 -11.56 15 18 H 0.09 0.83 8.14 -2.38 -0.02 0.81 15 19 H 0.12 0.67 8.14 -2.39 -0.02 0.66 15 20 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.22 1.98 8.06 -2.91 -0.02 1.96 15 22 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 23 H 0.11 3.40 8.14 -2.39 -0.02 3.38 15 24 H 0.09 3.02 8.14 -2.39 -0.02 3.00 15 25 H 0.05 2.27 7.20 -2.39 -0.02 2.25 15 26 H 0.04 1.91 7.57 -2.39 -0.02 1.89 15 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 Total: -1.00 -76.53 254.86 4.43 -72.10 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.09 Total: 4.55 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.45 Total: -26.57 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.78 Total: -80.98 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: -13.13 SS G_CDS: -1.22 Total: -14.36 kcal Total: -76.53 4.43 -72.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353737.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.913 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds