Wall clock time and date at job start Sun Mar 29 2020 21:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 H 1.08993 * 112.85511 * 51.69238 * 12 10 9 14 14 C 1.53785 * 113.61338 * 280.49046 * 12 10 9 15 15 C 1.53776 * 87.08300 * 220.02306 * 14 12 10 16 16 C 1.53785 * 87.08314 * 25.43278 * 15 14 12 17 17 H 1.09002 * 113.61189 * 89.11601 * 16 15 14 18 18 C 1.50699 * 113.61786 * 220.01950 * 16 15 14 19 19 N 1.34777 * 119.99782 * 277.50075 * 18 16 15 20 20 O 1.21279 * 120.00024 * 97.48960 * 18 16 15 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09005 * 113.61299 * 334.56959 * 14 12 10 24 24 H 1.08999 * 113.61267 * 105.47073 * 14 12 10 25 25 H 1.09000 * 113.61655 * 139.97832 * 15 14 12 26 26 H 1.08997 * 113.61693 * 270.88361 * 15 14 12 27 27 H 0.96998 * 120.00381 * 359.97438 * 19 18 16 28 28 H 0.96996 * 119.99502 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 1 5.9876 -1.7458 0.7767 14 6 6.1705 -2.1175 -1.3968 15 6 7.2184 -3.1865 -1.0448 16 6 6.1765 -3.7778 -0.0806 17 1 5.5229 -4.5170 -0.5439 18 6 6.7617 -4.2490 1.2257 19 7 7.3353 -5.4659 1.3072 20 8 6.7166 -3.5331 2.2036 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.5152 -2.4028 -2.2199 24 1 6.5889 -1.1179 -1.5144 25 1 7.4666 -3.8453 -1.8770 26 1 8.0994 -2.7859 -0.5435 27 1 7.3712 -6.0386 0.5251 28 1 7.7116 -5.7693 2.1481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325040525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:27 Heat of formation + Delta-G solvation = -60.938946 kcal Electronic energy + Delta-G solvation = -14017.528707 eV Core-core repulsion = 11454.907081 eV Total energy + Delta-G solvation = -2562.621626 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30797 -38.26695 -36.48219 -33.90186 -33.50716 -31.59899 -27.04702 -26.54573 -24.10321 -21.31635 -19.86168 -19.01792 -18.28153 -17.52408 -16.60780 -15.87556 -15.03474 -14.59791 -14.34634 -13.94644 -13.50504 -12.97707 -12.67547 -12.28777 -12.21158 -11.70561 -11.23211 -11.13834 -10.71333 -10.49500 -10.35228 -9.92715 -9.61722 -9.59998 -9.53181 -8.43179 -8.13960 -6.27745 -3.78523 2.79749 3.08465 3.11732 3.19076 3.65025 3.75072 4.14659 4.56753 4.67593 4.71737 4.92095 5.15098 5.31243 5.41356 5.68587 5.87008 5.90670 5.98758 6.12568 6.21364 6.57492 6.85000 7.41057 7.61354 8.18973 8.40543 8.63413 8.98307 9.47532 9.87642 10.85390 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.046954 B = 0.008164 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.187487 B = 3429.059902 C = 3577.273001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.585 5.585 10 C 0.462 3.538 11 O -0.581 6.581 12 C -0.108 4.108 13 H 0.113 0.887 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.115 4.115 17 H 0.127 0.873 18 C 0.531 3.469 19 N -0.858 5.858 20 O -0.542 6.542 21 H 0.273 0.727 22 H 0.372 0.628 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.400 0.600 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.245 -4.848 -2.945 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.222 5.222 10 C 0.248 3.752 11 O -0.465 6.465 12 C -0.130 4.130 13 H 0.131 0.869 14 C -0.165 4.165 15 C -0.160 4.160 16 C -0.136 4.136 17 H 0.145 0.855 18 C 0.316 3.684 19 N -0.421 5.421 20 O -0.418 6.418 21 H 0.084 0.916 22 H 0.205 0.795 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.228 0.772 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 15.480 -4.811 -2.416 16.390 hybrid contribution 0.640 0.896 0.095 1.105 sum 16.121 -3.915 -2.320 16.751 Atomic orbital electron populations 1.69625 1.05661 1.27488 1.49402 1.25040 0.95493 0.98002 0.97568 0.86683 0.79991 0.83984 0.78916 1.19557 1.20161 1.19293 1.19463 0.79382 0.96617 1.47970 0.86328 1.42194 1.07442 1.06290 1.66290 1.19534 0.87891 0.84387 0.83352 1.90524 1.69617 1.31214 1.55097 1.22527 0.94803 0.96566 0.99116 0.86938 1.22836 0.97500 0.99418 0.96718 1.22807 0.96560 0.98425 0.98250 1.22643 0.98654 0.98694 0.93633 0.85509 1.20585 0.76404 0.80948 0.90455 1.43861 1.63179 1.18850 1.16233 1.90720 1.57374 1.55211 1.38460 0.91642 0.79532 0.89121 0.90570 0.90456 0.89820 0.77182 0.77344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.96 55.50 0.77 -25.46 15 2 C 0.04 1.18 5.50 -17.47 -0.10 1.08 15 3 Si 0.88 19.95 27.74 -169.99 -4.71 15.23 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 6 H -0.27 -5.66 6.52 56.52 0.37 -5.29 15 7 C -0.31 -8.91 10.16 -14.93 -0.15 -9.06 15 8 H 0.12 3.92 7.39 -52.48 -0.39 3.53 15 9 N -0.58 -14.62 5.09 -10.96 -0.06 -14.67 15 10 C 0.46 11.01 7.31 -10.98 -0.08 10.93 15 11 O -0.58 -15.99 15.50 5.55 0.09 -15.90 15 12 C -0.11 -1.93 3.47 -90.96 -0.32 -2.25 15 13 H 0.11 2.02 7.44 -51.93 -0.39 1.63 15 14 C -0.13 -1.73 7.63 -25.92 -0.20 -1.92 15 15 C -0.12 -1.37 7.63 -25.92 -0.20 -1.57 15 16 C -0.11 -1.72 3.46 -90.95 -0.31 -2.03 15 17 H 0.13 1.97 7.47 -51.93 -0.39 1.59 15 18 C 0.53 8.18 7.63 -10.99 -0.08 8.10 15 19 N -0.86 -8.80 8.87 31.22 0.28 -8.52 15 20 O -0.54 -10.75 16.74 5.56 0.09 -10.66 15 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 22 H 0.37 8.27 5.76 -40.82 -0.24 8.04 15 23 H 0.09 1.28 8.09 -51.93 -0.42 0.86 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 26 H 0.08 0.87 8.09 -51.93 -0.42 0.45 15 27 H 0.40 2.82 8.83 -40.82 -0.36 2.46 15 28 H 0.40 3.54 8.93 -40.82 -0.36 3.17 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -35.84 248.00 -4.22 -40.06 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -2.98 Total: 12.92 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.44 Total: 3.28 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 1.00 Total: -48.66 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: 0.18 Total: -26.56 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -35.84 -4.22 -40.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.883 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds