Wall clock time and date at job start Sun Mar 29 2020 21:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 H 1.08993 * 112.85511 * 51.69238 * 12 10 9 14 14 C 1.53785 * 113.61338 * 280.49046 * 12 10 9 15 15 C 1.53776 * 87.08300 * 220.02306 * 14 12 10 16 16 C 1.53785 * 87.08314 * 25.43278 * 15 14 12 17 17 H 1.09002 * 113.61189 * 89.11601 * 16 15 14 18 18 C 1.50699 * 113.61786 * 220.01950 * 16 15 14 19 19 N 1.34777 * 119.99782 * 277.50075 * 18 16 15 20 20 O 1.21279 * 120.00024 * 97.48960 * 18 16 15 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09005 * 113.61299 * 334.56959 * 14 12 10 24 24 H 1.08999 * 113.61267 * 105.47073 * 14 12 10 25 25 H 1.09000 * 113.61655 * 139.97832 * 15 14 12 26 26 H 1.08997 * 113.61693 * 270.88361 * 15 14 12 27 27 H 0.96998 * 120.00381 * 359.97438 * 19 18 16 28 28 H 0.96996 * 119.99502 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 1 5.9876 -1.7458 0.7767 14 6 6.1705 -2.1175 -1.3968 15 6 7.2184 -3.1865 -1.0448 16 6 6.1765 -3.7778 -0.0806 17 1 5.5229 -4.5170 -0.5439 18 6 6.7617 -4.2490 1.2257 19 7 7.3353 -5.4659 1.3072 20 8 6.7166 -3.5331 2.2036 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.5152 -2.4028 -2.2199 24 1 6.5889 -1.1179 -1.5144 25 1 7.4666 -3.8453 -1.8770 26 1 8.0994 -2.7859 -0.5435 27 1 7.3712 -6.0386 0.5251 28 1 7.7116 -5.7693 2.1481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325040525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:27 Heat of formation + Delta-G solvation = -91.857235 kcal Electronic energy + Delta-G solvation = -14018.869425 eV Core-core repulsion = 11454.907081 eV Total energy + Delta-G solvation = -2563.962343 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63662 -39.89930 -37.90935 -36.00475 -34.58953 -33.75437 -28.65036 -27.69281 -25.93052 -22.45630 -21.51485 -20.76154 -19.91893 -18.68136 -17.94685 -17.41585 -16.91722 -15.97460 -15.70488 -15.50935 -15.16933 -14.84331 -14.31266 -13.85326 -13.64310 -13.08127 -12.83605 -12.45896 -12.41905 -12.06587 -11.88842 -11.53904 -11.41709 -10.82489 -10.64279 -10.35555 -10.27642 -8.44453 -6.05214 1.29344 1.32779 1.42574 1.62437 1.90444 2.20789 2.60128 2.98406 3.12214 3.41179 3.62543 3.81048 3.96516 4.27044 4.45045 4.72883 4.76032 4.92144 5.06317 5.09482 5.43619 5.53422 5.91196 5.93173 6.47719 6.55080 6.83523 7.36055 7.37901 7.91167 8.73152 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.046954 B = 0.008164 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.187487 B = 3429.059902 C = 3577.273001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.962 3.038 4 H -0.249 1.249 5 H -0.272 1.272 6 H -0.240 1.240 7 C -0.333 4.333 8 H 0.056 0.944 9 N -0.587 5.587 10 C 0.459 3.541 11 O -0.627 6.627 12 C -0.119 4.119 13 H 0.115 0.885 14 C -0.119 4.119 15 C -0.094 4.094 16 C -0.120 4.120 17 H 0.118 0.882 18 C 0.526 3.474 19 N -0.832 5.832 20 O -0.594 6.594 21 H 0.280 0.720 22 H 0.389 0.611 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.419 0.581 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.625 -3.711 -3.896 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.211 4.211 3 Si 0.782 3.218 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.163 1.163 7 C -0.462 4.462 8 H 0.074 0.926 9 N -0.226 5.226 10 C 0.248 3.752 11 O -0.513 6.513 12 C -0.141 4.141 13 H 0.133 0.867 14 C -0.157 4.157 15 C -0.131 4.131 16 C -0.142 4.142 17 H 0.136 0.864 18 C 0.311 3.689 19 N -0.395 5.395 20 O -0.475 6.475 21 H 0.090 0.910 22 H 0.224 0.776 23 H 0.102 0.898 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.250 0.750 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 18.902 -3.737 -3.396 19.565 hybrid contribution -0.485 0.361 0.404 0.727 sum 18.417 -3.376 -2.992 18.961 Atomic orbital electron populations 1.69797 1.08030 1.29328 1.50020 1.26099 0.96486 1.02626 0.95879 0.85401 0.79252 0.76842 0.80315 1.17305 1.19734 1.16322 1.19059 0.81483 0.95050 1.50607 0.92578 1.42065 1.05868 1.07633 1.67040 1.20806 0.90649 0.83205 0.80568 1.90490 1.71552 1.32876 1.56425 1.22687 0.89582 0.99444 1.02388 0.86692 1.22881 0.97583 1.02007 0.93239 1.22770 0.95310 0.97177 0.97846 1.22714 0.99863 0.97012 0.94594 0.86445 1.20713 0.76417 0.81860 0.89872 1.43613 1.61054 1.17274 1.17570 1.90699 1.59854 1.57044 1.39905 0.91019 0.77587 0.89842 0.87883 0.86925 0.88049 0.74991 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.96 21.66 0.30 -57.00 15 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 15 3 Si 0.96 40.40 27.74 68.60 1.90 42.30 15 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 6 H -0.24 -8.90 6.52 99.48 0.65 -8.25 15 7 C -0.33 -20.33 10.16 84.04 0.85 -19.47 15 8 H 0.06 4.03 7.39 -2.91 -0.02 4.01 15 9 N -0.59 -29.72 5.09 -306.97 -1.56 -31.28 15 10 C 0.46 22.32 7.31 87.65 0.64 22.96 15 11 O -0.63 -36.20 15.50 -3.06 -0.05 -36.25 15 12 C -0.12 -4.10 3.47 -11.01 -0.04 -4.14 15 13 H 0.12 3.95 7.44 -2.39 -0.02 3.93 15 14 C -0.12 -2.84 7.63 31.12 0.24 -2.61 15 15 C -0.09 -1.68 7.63 31.12 0.24 -1.44 15 16 C -0.12 -3.38 3.46 -11.01 -0.04 -3.41 15 17 H 0.12 3.55 7.47 -2.39 -0.02 3.53 15 18 C 0.53 15.38 7.63 87.66 0.67 16.05 15 19 N -0.83 -15.04 8.87 -173.54 -1.54 -16.58 15 20 O -0.59 -23.27 16.74 -3.03 -0.05 -23.32 15 21 H 0.28 15.69 8.31 -92.71 -0.77 14.92 15 22 H 0.39 16.74 5.76 -92.70 -0.53 16.20 15 23 H 0.08 2.14 8.09 -2.38 -0.02 2.12 15 24 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 26 H 0.10 1.56 8.09 -2.39 -0.02 1.54 15 27 H 0.42 4.59 8.83 -92.71 -0.82 3.77 15 28 H 0.41 6.31 8.93 -92.71 -0.83 5.48 15 Total: -1.00 -84.40 248.00 1.01 -83.39 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -1.02 Total: 31.00 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 3.03 Total: 7.72 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -2.80 Total: -104.85 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -0.10 Total: -59.57 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.90 Total: 42.30 kcal Total: -84.40 1.01 -83.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.464 kcal (2) G-P(sol) polarization free energy of solvation -84.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds