Wall clock time and date at job start Sun Mar 29 2020 21:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48498 * 109.47332 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47266 * 120.00222 * 3 2 1 6 6 H 1.48501 * 109.47028 * 240.00139 * 3 2 1 7 7 C 1.38949 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99619 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00149 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99792 * 180.02562 * 10 9 7 13 13 H 1.09005 * 112.85229 * 26.79779 * 12 10 9 14 14 C 1.53783 * 113.61711 * 157.99272 * 12 10 9 15 15 C 1.53779 * 87.08164 * 139.97952 * 14 12 10 16 16 C 1.53777 * 87.08558 * 334.57224 * 15 14 12 17 17 H 1.08998 * 113.61974 * 139.97907 * 16 15 14 18 18 C 1.50702 * 113.61204 * 270.88751 * 16 15 14 19 19 N 1.34773 * 120.00040 * 181.38868 * 18 16 15 20 20 O 1.21283 * 119.99915 * 1.38370 * 18 16 15 21 21 H 0.97008 * 119.99901 * 179.97438 * 1 2 3 22 22 H 0.96995 * 119.99777 * 0.02562 * 9 7 2 23 23 H 1.09003 * 113.61444 * 254.53151 * 14 12 10 24 24 H 1.09001 * 113.60832 * 25.43497 * 14 12 10 25 25 H 1.09004 * 113.60952 * 89.11765 * 15 14 12 26 26 H 1.08997 * 113.61920 * 220.01663 * 15 14 12 27 27 H 0.97000 * 119.99859 * 359.97438 * 19 18 16 28 28 H 0.97003 * 119.99881 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 1 0.2560 -4.7811 -0.4544 14 6 2.0675 -6.0495 -0.5291 15 6 1.4286 -6.8892 0.5896 16 6 1.2411 -5.5733 1.3628 17 1 0.2880 -5.5071 1.8876 18 6 2.4167 -5.2122 2.2338 19 7 2.3777 -4.0975 2.9903 20 8 3.3979 -5.9248 2.2541 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3535 -2.3906 -0.0005 23 1 1.7816 -6.3678 -1.5316 24 1 3.1437 -5.9185 -0.4162 25 1 0.4905 -7.3622 0.2989 26 1 2.1225 -7.5811 1.0669 27 1 1.5930 -3.5274 2.9739 28 1 3.1343 -3.8653 3.5512 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325040526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:28 Heat of formation + Delta-G solvation = -63.589734 kcal Electronic energy + Delta-G solvation = -14426.998059 eV Core-core repulsion = 11864.261487 eV Total energy + Delta-G solvation = -2562.736572 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41782 -37.96019 -36.34842 -34.25814 -33.16305 -31.09033 -26.72356 -26.33527 -24.13364 -21.57421 -20.16066 -18.62704 -17.93380 -17.10836 -16.67201 -15.51051 -15.48372 -14.60080 -13.91920 -13.90294 -13.69754 -13.15506 -12.86684 -12.27257 -11.63339 -11.26553 -11.00427 -10.87914 -10.46194 -10.24883 -10.18133 -9.90408 -9.59062 -9.51326 -9.18767 -8.40329 -8.08684 -6.80530 -3.93784 2.99848 3.27148 3.31775 3.51413 3.73889 3.87555 4.22247 4.70946 4.78532 4.92013 5.08188 5.17908 5.35797 5.47101 5.74621 5.82236 6.00082 6.10053 6.24648 6.34818 6.73508 7.20591 7.75258 7.76754 8.03291 8.54373 8.70639 8.75170 9.42423 9.84113 10.62521 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.046467 B = 0.009114 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.429560 B = 3071.569610 C = 3253.232536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.008 4.008 3 Si 1.090 2.910 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.382 4.382 8 H 0.098 0.902 9 N -0.571 5.571 10 C 0.446 3.554 11 O -0.574 6.574 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.126 4.126 17 H 0.098 0.902 18 C 0.549 3.451 19 N -0.843 5.843 20 O -0.546 6.546 21 H 0.261 0.739 22 H 0.375 0.625 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.401 0.599 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -7.457 2.965 8.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.211 4.211 3 Si 0.916 3.084 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.511 4.511 8 H 0.116 0.884 9 N -0.208 5.208 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.138 4.138 13 H 0.121 0.879 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.148 4.148 17 H 0.116 0.884 18 C 0.334 3.666 19 N -0.405 5.405 20 O -0.423 6.423 21 H 0.072 0.928 22 H 0.208 0.792 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.229 0.771 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.613 -6.331 2.847 7.127 hybrid contribution -0.647 -1.123 0.169 1.307 sum -2.260 -7.454 3.015 8.352 Atomic orbital electron populations 1.70918 1.06497 1.29372 1.47074 1.26477 0.96514 1.02585 0.95484 0.83147 0.74451 0.73734 0.77094 1.20421 1.21055 1.21039 1.20541 0.94648 0.83928 1.51996 0.88431 1.42022 1.08058 1.05557 1.65175 1.19614 0.88266 0.84275 0.84690 1.90565 1.13556 1.86745 1.54923 1.22614 1.00799 0.94728 0.95685 0.87926 1.22827 1.01543 0.93360 0.97688 1.22738 1.01238 0.95119 0.96746 1.22372 0.97843 0.99393 0.95220 0.88408 1.19708 0.87757 0.80499 0.78667 1.43651 1.22695 1.26481 1.47643 1.90655 1.33931 1.51881 1.65857 0.92763 0.79210 0.91463 0.88230 0.89631 0.89966 0.77138 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.68 55.50 0.76 -23.51 15 2 C -0.01 -0.21 5.50 -17.47 -0.10 -0.30 15 3 Si 1.09 23.71 29.92 -169.99 -5.09 18.62 15 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 15 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.38 -10.33 9.68 -14.93 -0.14 -10.48 15 8 H 0.10 2.85 7.16 -52.49 -0.38 2.47 15 9 N -0.57 -13.64 5.28 -10.96 -0.06 -13.70 15 10 C 0.45 10.21 6.10 -10.99 -0.07 10.14 15 11 O -0.57 -15.59 14.81 5.55 0.08 -15.51 15 12 C -0.12 -2.02 4.10 -90.96 -0.37 -2.39 15 13 H 0.10 1.51 8.14 -51.93 -0.42 1.08 15 14 C -0.12 -1.95 7.17 -25.92 -0.19 -2.14 15 15 C -0.12 -1.70 7.45 -25.92 -0.19 -1.89 15 16 C -0.13 -1.97 4.26 -90.96 -0.39 -2.36 15 17 H 0.10 1.22 8.14 -51.93 -0.42 0.79 15 18 C 0.55 10.25 5.74 -10.99 -0.06 10.18 15 19 N -0.84 -13.91 8.53 31.22 0.27 -13.65 15 20 O -0.55 -11.99 16.52 5.55 0.09 -11.90 15 21 H 0.26 6.73 6.78 -40.82 -0.28 6.46 15 22 H 0.37 8.26 6.73 -40.82 -0.27 7.98 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.10 2.03 7.23 -51.93 -0.38 1.66 15 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.08 1.23 7.45 -51.93 -0.39 0.84 15 27 H 0.40 6.06 8.83 -40.82 -0.36 5.70 15 28 H 0.40 6.19 8.93 -40.82 -0.36 5.83 15 LS Contribution 245.74 15.07 3.70 3.70 Total: -1.00 -33.48 245.74 -4.65 -38.13 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -2.90 Total: 17.05 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.51 Total: 0.76 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.97 Total: -50.86 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: 0.17 Total: -27.41 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.09 Total: 18.62 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.48 -4.65 -38.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.457 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds